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Shuyi Ma

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Assistant Professor

Seattle Children's Hospital

United States

Research Interests

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Recent Grants

Grant: Open

Seattle Tuberculosis Research Advancement Center

Open Date: 2022-03-21

Close Date: 2027-02-28

Grant: Close

Network Dissection of Host-Pathogen Interactions in Mycobacterium tuberculosis Infection

Open Date: 2021-08-03

Close Date: 2026-07-31

Grant: Close

Transcriptome-driven inference of adverse drug interactions

Open Date: 2021-01-02

Close Date: 2024-03-31

Grant: Close

The role of ferroptosis in regulating host control of M. tuberculosis infection

Open Date:

Close Date:

Grant: Close

Modeling and manipulating transcription factor activities to shorten tuberculosis therapy

Open Date:

Close Date:

Articles (12)

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2026

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2025

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2025

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2024

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2024

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2024

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2023

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2023

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2023

Year:

2023

Collaborators (9)

Professor of Medicine

UNITED STATES

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Shuyi Ma

Research Interests

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Recent Grants

Articles (12)

Transcript-Capture sequencing enriches mRNA of <i>Mycobacterium tuberculosis</i> from host samples

Predicting fitness in Mycobacterium tuberculosis with transcriptional regulatory network-informed interpretable machine learning

Divergent transcriptional regulation of redox-homeostasis and permeability modulate rifampicin tolerance and sensitivity in Mycobacterium tuberculosis.

Mycobacteria that cause tuberculosis have retained ancestrally acquired genes for the biosynthesis of chemically diverse terpene nucleosides

Catalase activity deficiency sensitizes multidrug-resistant Mycobacterium tuberculosis to the ATP synthase inhibitor bedaquiline.

PEPITA: Parallelized High-Throughput Quantification of Ototoxicity and Otoprotection in Zebrafish Larvae.

In vivo screening for toxicity-modulating drug interactions identifies antagonism that protects against ototoxicity in zebrafish.

Deciphering Microbial Regulation of Heterogeneity and Drug Adaptation with Meta-transcriptomics and Other System-Level Tools

Letter to the editor in response to Hoskote “Corrected formula for rectangular area ratio (RAR), a parameter used to quantify airflow limitation on expiratory flow-volume curves” Respiratory Medicine 2022; 204: 107032

The Mycobacterium tuberculosis protein O-phosphorylation landscape

Ten simple rules for managing laboratory information

100 Vancomycin demonstrates activity against Mycobacterium abscessus in combination with guideline-recommended antibiotics under physiologically relevant stress conditions

Collaborators (9)

Michele Girardi

Pradeep Kumar

Richard Jones

Philip Bourne

Christoph Grundner

Jason Yang

Adriaan Minnaard

David Sherman

Janos Porszasz

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