Susan Holmes

Professor

Stanford University

United States

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About

Professor Susan Holmes is a faculty member at Stanford University in the United States. Her research includes areas such as microbial biology, immune response in relation to Long Covid, and the analysis of gut bacteria dynamics. She is actively involved in the Bioconductor community, focusing on biological data science and statistical modeling of complex biological systems.

Articles (11)

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2025

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2025

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2024

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2023

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2023

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2022

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2022

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2021

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2020

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2020

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2020

Collaborators (8)

Robert Castelo

Associate Professor

Universitat Pompeu Fabra

SPAIN

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Douglas Kwon

Harvard University

UNITED STATES

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postdoctoral fellow / lecturer

Stanford University

UNITED STATES

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Susan Holmes

Research Interests

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Articles (11)

Brief antibiotic use drives human gut bacteria towards low-cost resistance

Learning and teaching biological data science in the Bioconductor community

Sex differences and immune correlates of Long Covid development, symptom persistence, and resolution

Modeling the heterogeneity in COVID-19's reproductive number and its impact on predictive scenarios

Sub-communities of the vaginal microbiota in pregnant and non-pregnant women

Stereotypic Expansion of T Regulatory and Th17 Cells during Infancy Is Disrupted by HIV Exposure and Gut Epithelial Damage

Labeling Self-Tracked Menstrual Health Records With Hidden Semi-Markov Models

A Statistical Perspective on the Challenges in Molecular Microbial Biology

Mass Cytometry Analysis of the NK Cell Receptor–Ligand Repertoire Reveals Unique Differences between Dengue-Infected Children and Adults

Author Correction: Gut microbiota plasticity is correlated with sustained weight loss on a low-carb or low-fat dietary intervention

Gut microbiota plasticity is correlated with sustained weight loss on a low-carb or low-fat dietary intervention

Collaborators (8)

Robert Castelo

Douglas Kwon

Upinder Singh

David A. Relman

Catherine Blish

Jacques Ravel

Pratheepa Jeganathan

Laura Symul

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