Taner Sen

Adjunct Professor

University of California, Berkeley

United States

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Taner Sen is an Adjunct Professor at the University of California, Berkeley. His research areas encompass structural variability of Pfam domains, genome assembly of wild relatives of bread wheat, and the application of generative artificial intelligence in genetic data retrieval. Additionally, he focuses on genome-wide association studies and the development of tools for protein structural analysis in Fusarium species.

Articles (20)

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2025

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2021

Collaborators (4)

Jonathan Wood

Wellcome Sanger Institute

UNITED KINGDOM

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Hikmet Budak

Professor

UNITED STATES

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Simon G. Krattinger

SAUDI ARABIA

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Roger P Wise

Iowa State University

UNITED STATES

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Taner Sen

Research Interests

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About

Articles (20)

Chromosome-level haplotype-resolved genome assembly of bread wheat’s wild relative Aegilops mutica

Structural Variability of Pfam Domains Based on Alphafold2 Predictions

Assessing the performance of generative artificial intelligence in retrieving information against manually curated genetic and genomic data

Harnessing the predicted maize pan-interactome for putative gene function prediction and prioritization of candidate genes for important traits

One hundred years of comparative genetic and physical mapping in cultivated oat (Avena sativa)

A uniform gene and chromosome nomenclature system for oat (Avena spp.)

Fusarium Protein Toolkit: a web-based resource for structural and variant analysis of Fusarium species.

Genome-wide association studies on resistance to powdery mildew in cultivated emmer wheat.

Chromosome-scale genome assembly of bread wheat's wild relative Triticum timopheevii.

Updated guidelines for gene nomenclature in wheat.

PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models

Co-expression pan-network reveals genes involved in complex traits within maize pan-genome.

Capturing Wheat Phenotypes at the Genome Level.

G4Boost: a machine learning-based tool for quadruplex identification and stability prediction.

Experimental and computational studies of cellulases as bioethanol enzymes

GrainGenes: a data-rich repository for small grains genetics and genomics.

GrainGenes: Tools and Content to Assist Breeders Improving Oat Quality

Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing.

mirMachine: A One-Stop Shop for Plant miRNA Annotation.

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.

Collaborators (4)

Jonathan Wood

Hikmet Budak

Simon G. Krattinger

Roger P Wise

Make your next move.

Taner Sen

Research Interests

Explore related searches

Contact this professor

About

Articles (20)

Chromosome-level haplotype-resolved genome assembly of bread wheat’s wild relative Aegilops mutica

Structural Variability of Pfam Domains Based on Alphafold2 Predictions

Assessing the performance of generative artificial intelligence in retrieving information against manually curated genetic and genomic data

Harnessing the predicted maize pan-interactome for putative gene function prediction and prioritization of candidate genes for important traits

One hundred years of comparative genetic and physical mapping in cultivated oat (Avena sativa)

A uniform gene and chromosome nomenclature system for oat (Avena spp.)

​Fusarium Protein Toolkit: a web-based resource for structural and variant analysis of Fusarium species.

Genome-wide association studies on resistance to powdery mildew in cultivated emmer wheat.

Chromosome-scale genome assembly of bread wheat's wild relative Triticum timopheevii.

Updated guidelines for gene nomenclature in wheat.

PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models

Co-expression pan-network reveals genes involved in complex traits within maize pan-genome.

Capturing Wheat Phenotypes at the Genome Level.

G4Boost: a machine learning-based tool for quadruplex identification and stability prediction.

Experimental and computational studies of cellulases as bioethanol enzymes

GrainGenes: a data-rich repository for small grains genetics and genomics.

GrainGenes: Tools and Content to Assist Breeders Improving Oat Quality

Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing.

mirMachine: A One-Stop Shop for Plant miRNA Annotation.

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.

Collaborators (4)

Jonathan Wood

Hikmet Budak

Simon G. Krattinger

Roger P Wise

Make your next move.

Fusarium Protein Toolkit: a web-based resource for structural and variant analysis of Fusarium species.