Tsukasa Fukunaga

Associate Professor

Waseda University

Japan

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Tsukasa Fukunaga is an Associate Professor at Waseda University in Japan. His research areas include bioinformatics, RNA accessibility prediction, and the molecular mechanisms behind gene expression in neuropathic pain. He has published recent articles on topics such as virus-host interactions, phylogenetic profiling, and microbial interactions using advanced computational methods.

Articles (10)

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2023

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2023

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2023

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2022

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2022

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2022

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2021

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2021

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2021

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2021

Collaborators (4)

Hirotaka Matsumoto

Nagasaki University

JAPAN

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Michiaki Hamada

Professor

Waseda University

JAPAN

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Hitoshi Iuchi

Waseda University

JAPAN

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Keisuke Yamada

University of Pennsylvania

UNITED STATES

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Tsukasa Fukunaga

Research Interests

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Articles (10)

Bioinformatics approaches for unveiling virus-host interactions

DeepRaccess: high-speed RNA accessibility prediction using deep learning

Neat1 lncRNA organizes the inflammatory gene expressions in the dorsal root ganglion in neuropathic pain caused by nerve injury

Inverse Potts model improves accuracy of phylogenetic profiling

LinAliFold and CentroidLinAliFold: Fast RNA consensus secondary structure prediction for aligned sequences using beam search methods

Mirage 2.0: fast and memory-efficient reconstruction of gene-content evolution considering heterogeneous evolutionary patterns among gene families

Novel metric for hyperbolic phylogenetic tree embeddings

Representation learning applications in biological sequence analysis.

Mirage: estimation of ancestral gene-copy numbers by considering different evolutionary patterns among gene families

Umibato: Estimation of time-varying microbial interaction using continuous-time regression hidden Markov model

Collaborators (4)

Hirotaka Matsumoto

Michiaki Hamada

Hitoshi Iuchi

Keisuke Yamada

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