William Stafford Noble

United States

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Articles (30)

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Collaborators (11)

Gang Li

University of Washington

UNITED STATES

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Brian Beliveau

University of Washington

UNITED STATES

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Ran Zhang

Assistant Professor

University of North Carolina at Chapel Hill

UNITED STATES

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Chengxiang Qiu

Assistant Professor

Dartmouth College

UNITED STATES

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Bo Wen

Baylor College of Medicine

UNITED STATES

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Jean-Philippe Vert

Chief R&D officer

Owkin Inc

FRANCE

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Wout Bittremieux

University of Antwerp

BELGIUM

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Karine G. Le Roch

Professor

University of California Riverside

UNITED STATES

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Lukas Käll

KTH Royal Institute of Technology

SWEDEN

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Anshul Kundaje

Associate Professor

Stanford University

UNITED STATES

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Uri Keich

A/Prof

University of Sydney

AUSTRALIA

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William Stafford Noble

Research Interests

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Articles (30)

A transformer model for de novo sequencing of data-independent acquisition mass spectrometry data

Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment

How to Train a Postprocessor for Tandem Mass Spectrometry Proteomics Database Search While Maintaining Control of the False Discovery Rate

Predicting chromatin conformation contact maps

Sceptic: pseudotime analysis for time-series single-cell sequencing and imaging data.

Multicondition and multimodal temporal profile inference during mouse embryonic development.

Predicting cell cycle stage from 3D single-cell nuclear-stained images

Fast and Memory-Efficient Searching of Large-Scale Mass Spectrometry Data Using Tide

Improved Detection of Differentially Abundant Proteins through FDR-Control of Peptide-Identity-Propagation

Self-supervised learning from small-molecule mass spectrometry data

Target‐decoy false discovery rate estimation using Crema

Analysis of Tandem Mass Spectrometry Data with CONGA: Combining Open and Narrow Searches with Group-Wise Analysis

Reinvestigating the Correctness of Decoy-Based False Discovery Rate Control in Proteomics Tandem Mass Spectrometry

A learned score function improves the power of mass spectrometry database search

Accounting for Digestion Enzyme Bias in Casanovo

Sequence-to-sequence translation from mass spectra to peptides with a transformer model

Response to “The perpetual motion machine of AI-generated data and the distraction of ChatGPT as a ‘scientist’”

Proteome-Wide Identification of RNA-dependent proteins and an emerging role for RNAs in Plasmodium falciparum protein complexes

Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes

Bridging the False Discovery Gap

LSMMD-MA: scaling multimodal data integration for single-cell genomics data analysis

Matrix prior for data transfer between single cell data types in latent Dirichlet allocation

Efficient Indexing of Peptides for Database Search Using Tide

MS1Connect: a mass spectrometry run similarity measure

Ten simple rules for defining a computational biology project

Inference of 3D genome architecture by modeling overdispersion of Hi-C data

Evaluating Proteomics Imputation Methods with Improved Criteria

Improving Peptide-Level Mass Spectrometry Analysis via Double Competition

Reducing Peptide Sequence Bias in Quantitative Mass Spectrometry Data with Machine Learning

A learned embedding for efficient joint analysis of millions of mass spectra

Collaborators (11)

Gang Li

Brian Beliveau

Ran Zhang

Chengxiang Qiu

Bo Wen

Jean-Philippe Vert

Wout Bittremieux

Karine G. Le Roch

Lukas Käll

Anshul Kundaje

Uri Keich

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