Yaping Liu

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Assistant Professor

Northwestern University

United States

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About

Yaping Liu is an Assistant Professor at Northwestern University, United States. His research focuses on cancer genomics, DNA methylation dynamics, and the characterization of cell-free DNA fragmentation patterns. His recent work includes studies on the transcriptomic imbalance in cancer cells and the interactions of enhancers and promoters in nephron development. Professor Liu's contributions also encompass the development of databases and tools for analyzing genomic and epigenomic data.

Recent Grants

Grant: Close

Inferring 1D and 3D epigenomes by cell-free DNA fragmentation patterns.

Open Date: 2022-09-27

Close Date: 2023-08-31

Grant: Open

Method Development for Single-Cell Multi-omics

Open Date: 2022-08-01

Close Date: 2027-07-31

Articles (10)

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2024

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2024

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2024

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2024

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2023

Year:

2022

Year:

2022

Year:

2022

Year:

2021

Year:

2020

Collaborators (20)

Qi Zhang

University of New Hampshire

UNITED STATES

Yaping Liu

Research Interests

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About

Recent Grants

Articles (10)

FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA

Reduced Nephron Endowment in Six2-TGC tg Mice Is Due to Six3 Misexpression by Aberrant Enhancer–Promoter Interactions in the Transgene

Tet-mediated DNA methylation dynamics affect chromosome organization

Downstream-of-gene (DoG) transcripts contribute to an imbalance in the cancer cell transcriptome

NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule

Human fetal cerebellar cell atlas informs medulloblastoma origin and oncogenesis

CRAG: de novo characterization of cell-free DNA fragmentation hotspots in plasma whole-genome sequencing

At the dawn: cell-free DNA fragmentomics and gene regulation

FinaleDB: a browser and database of cell-free DNA fragmentation patterns

Expanded encyclopaedias of DNA elements in the human and mouse genomes.

Collaborators (20)

Qi Zhang

Shannon Lauberth

Sarah Reed

Alan Boyle

Charles B. Epstein

Michael A Beer

Alec Victorsen

Alexendar Perez

Yueh-Chiang Hu

Peng He

J. Michael Cherry

Donghoon Lee

Julien Lagarde

Balaji Sundararaman

Rulang Jiang

Li Wang

Juan Carlos Rivera-Mulia

Ye Zheng

Guang-Yu Yang

If Barnes

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