Ying Zhang

United States

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Articles (21)

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2025

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2025

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2025

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2025

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2024

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2024

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2024

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2024

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2023

The bio-based production of organic chemicals provides a sustainable alternative to fossil-based production in the face of today’s climate challenges. In this work, we present a genome-scale metabolic reconstruction of Pyrococcus furiosus , a well-established platform organism that has been engineered to produce a variety of chemicals and fuels.

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2023

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2023

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2023

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2023

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2022

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2022

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2022

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2022

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2022

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2021

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2021

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2021

Collaborators (11)

Kristofer Bouchard

University of California

UNITED STATES

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Michael W W Adams

University of Georgia

UNITED STATES

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Stefanie Chen

Teaching Assistant Professor

North Carolina State University

UNITED STATES

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Bongkeun Song

UNITED STATES

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Rudiyanto Gunawan

University at Buffalo

UNITED STATES

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Christof Sager

Museum für Naturkunde

GERMANY

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Helena Filipsson

Lund University

SWEDEN

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Michael W. W. Adams

University of Georgia

UNITED STATES

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Patricia Thibodeau

Assistant Professor

University of New England

UNITED STATES

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Takaki Komiyama

Professor

University of California, San Diego

UNITED STATES

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Eun Jung Hwang

Assistant Professor

Rosalind Franklin University of Medicine and Science

UNITED STATES

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Ying Zhang

Research Interests

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Articles (21)

Xylanolytic metabolism is regulated by coordination of transcription factors XynR and XylR in extremely thermophilic Caldicellulosiruptorales

Morphological responses of a temperate intertidal foraminifer, Haynesina sp., to coastal acidification

Engineering the hyperthermophilic archaeon Pyrococcus furiosus for 1-propanol production

Array of metabolic pathways in a kleptoplastidic foraminiferan protist supports chemoautotrophy in dark, euxinic seafloor sediments

Metabolic engineering of Caldicellulosiruptor bescii for 2,3-butanediol production from unpretreated lignocellulosic biomass and metabolic strategies for improving yields and titers

Divergent learning-related transcriptional states of cortical glutamatergic neurons

Divergent Learning-Related Transcriptional States of Cortical Glutamatergic Neurons

Engineering ethanologenicity into the extremely thermophilic bacterium Anaerocellum (f. Caldicellulosiriuptor) bescii

Rewiring Dynamics of Functional Connectomes during Motor-Skill Learning

Optimizing Strategies for Bio-Based Ethanol Production Using Genome-Scale Metabolic Modeling of the Hyperthermophilic Archaeon, Pyrococcus furiosus

Manipulating Fermentation Pathways in the Hyperthermophilic Archaeon <i>Pyrococcus furiosus</i> for Ethanol Production up to 95°C Driven by Carbon Monoxide Oxidation

DL-TODA: A Deep Learning Tool for Omics Data Analysis

A predicted CRISPR-mediated symbiosis between uncultivated archaea

Two canonically aerobic foraminifera express distinct peroxisomal and mitochondrial metabolisms

Deep learning for neural decoding in motor cortex

A Mollicutes Metagenome-Assembled Genome from the Gut of the Pteropod Limacina rangii

Biochemical and Regulatory Analyses of Xylanolytic Regulons in Caldicellulosiruptor bescii Reveal Genus-Wide Features of Hemicellulose Utilization

Reconstruction and Analysis of Thermodynamically Constrained Models Reveal Metabolic Responses of a Deep-Sea Bacterium to Temperature Perturbations

FARCI: Fast and Robust Connectome Inference

FARCI: Fast and Robust Connectome Inference

Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core

Collaborators (11)

Kristofer Bouchard

Michael W W Adams

Stefanie Chen

Bongkeun Song

Rudiyanto Gunawan

Christof Sager

Helena Filipsson

Michael W. W. Adams

Patricia Thibodeau

Takaki Komiyama

Eun Jung Hwang

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