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Cock van Oosterhout

1 year ago

PhD Studentship: AI-powered insights into susceptibility of parrots to viral infection, CASE project with Ebony Forest and Durrell Wildlife Conservation Trust / Jersey Zoo University of East Anglia in United Kingdom

Degree Level

PhD

Field of study

Computer Science

Funding

Fully-funded ARIES studentship (fees, stipend, RTSG); international fee difference waived for limited number of studentships; relocation and visa costs not covered.

Deadline

Oct 1, 2026

Country flag

Country

United Kingdom

University

University of East Anglia

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Keywords

Computer Science
Evolutionary Biology
Environmental Science
Biology
Artificial Intelligence
Comparative Genomics
Disease Modeling
Wildlife Management
Immunogenetics
Conservation Genetics
Genomic
Phenotypic Variation
Bioinformatic
Epidemic
Bird

About this position

This PhD project at the University of East Anglia investigates the genetic basis of resistance, tolerance, and susceptibility to viral infections in threatened bird species, with a primary focus on the Mauritius parakeet. The research addresses how population bottlenecks erode genetic variation, increasing vulnerability to viral epidemics, and seeks to answer what makes individuals resistant, tolerant, or susceptible to viruses. The project leverages a rich dataset from over 20 years of viral outbreak monitoring and hundreds of sequenced bird genomes, including several well-studied avian models.

The successful candidate will analyze data from 531 full-sib pairs of Mauritius parakeets with known disease status, using bioinformatics and AI modelling to predict responses to viral infection based on genomics data. Comparative genomics across parakeets and parrots, as well as optional fieldwork in Mauritius, are integral components. The research methodology includes sequencing, immune gene analysis, constructing AI models to identify genomic predictors, and using SLiM modelling to assess how genomic erosion impacts immunogenetic diversity and disease susceptibility. Hypotheses to be tested include the effects of genome erosion, inbreeding, and runs of homozygosity on viral susceptibility, and the role of immune gene alleles in disease status.

Training will be provided in AI and SLiM modelling, genomics, immune gene analysis, bird conservation, and tropical fieldwork. Applicants should have a strong background in evolutionary biology, genetics, or conservation biology, with desirable skills in coding (Python, SLiM), AI modelling, and teamwork.

The position is full-time, starting 1 October 2026, and is funded by an ARIES studentship covering fees, a maintenance stipend (£20,780 p.a. for 2025/26), and a research training grant. International applicants may have the fee difference waived, but relocation and visa costs are not covered. English language proficiency (IELTS 6.5 overall, 6 in each category) is required.

Applications should be submitted via the University of East Anglia's admissions portal, ensuring all eligibility criteria are met.

Funding details

Fully-funded ARIES studentship (fees, stipend, RTSG); international fee difference waived for limited number of studentships; relocation and visa costs not covered.

What's required

Applicants must hold at least a UK equivalent Bachelors (Honours) 2:1 degree in Evolutionary Biology, Genetics, or Conservation Biology. Prior experience in computer coding (e.g., Python, SLiM), AI modelling, and understanding of evolutionary or conservation genetics/genomics is desirable. Good teamwork skills are essential. English language requirement: IELTS 6.5 overall, with at least 6 in each category.

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Professors

Professor at University of East Anglia

University Name

University of East Anglia

Research Interests

Artificial Intelligence

Wildlife Management

Biology

Comparative Genomics

Computer Science