Alexandru I. Tomescu

University of Helsinki

Finland

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Articles (19)

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2025

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2022

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2022

Collaborators (14)

Iman Hajirasouliha

UNITED STATES

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Brendan Mumey

Professor

Montana State University

UNITED STATES

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Andrea Vandelli

Italian Institute of Technology

ITALY

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Giulio Ermanno Pibiri

Ca' Foscari University of Venice

ITALY

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Veli Mäkinen

University of Helsinki

FINLAND

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Hagen U Tilgner

Associate Professor

Weill Cornell Medicine

UNITED STATES

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Leena Salmela

University of Helsinki

FINLAND

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Jarno Niklas Alanko

University of Helsinki

FINLAND

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Manuel Cáceres

Aalto University

FINLAND

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Johnathan Cooper‐Knock

UNITED KINGDOM

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Elia C. Zirondelli

University of Trento

ITALY

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Sebastian Schmidt

University of Helsinki

FINLAND

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Lucia Williams

Assistant Professor

University of Montana

UNITED STATES

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Hajk-Georg Drost

Academic, Principal Investigator/Senior Lecturer (Teaching and Research)

University of Dundee

UNITED KINGDOM

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Alexandru I. Tomescu

Research Interests

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Articles (19)

A single-cell, long-read, isoform-resolved case-control study of FTD reveals cell-type-specific and broad splicing dysregulation in human brain

A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types

Simplicity in Eulerian circuits: Uniqueness and safety

cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data

Width Helps and Hinders Splitting Flows

Flowtigs: Safety in flow decompositions for assembly graphs

Accurate Flow Decomposition via Robust Integer Linear Programming

PABLOG

Graphs cannot be indexed in polynomial time for sub-quadratic time string matching, unless SETH fails

Chaining for accurate alignment of erroneous long reads to acyclic variation graphs

Sensitive inference of alignment-safe intervals from biodiverse protein sequence clusters using EMERALD

On the Complexity of String Matching for Graphs

Matchtigs: minimum plain text representation of k-mer sets

Extremely fast construction and querying of compacted and colored de Bruijn graphs with GGCAT

Flow Decomposition With Subpath Constraints

Genome Assembly, from Practice to Theory: Safe, Complete and <i>Linear-Time</i>

A safety framework for flow decomposition problems via integer linear programming

Improving RNA Assembly via Safety and Completeness in Flow Decompositions

Efficient Minimum Flow Decomposition via Integer Linear Programming

Collaborators (14)

Iman Hajirasouliha

Brendan Mumey

Andrea Vandelli

Giulio Ermanno Pibiri

Veli Mäkinen

Hagen U Tilgner

Leena Salmela

Jarno Niklas Alanko

Manuel Cáceres

Johnathan Cooper‐Knock

Elia C. Zirondelli

Sebastian Schmidt

Lucia Williams

Hajk-Georg Drost

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