Veli Mäkinen

University of Helsinki

Finland

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Articles (12)

Year:

2024

Year:

2024

Year:

2024

Year:

2023

Year:

2023

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2023

Year:

2023

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2021

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2021

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2021

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2021

Year:

2020

Collaborators (12)

Leena Salmela

University of Helsinki

FINLAND

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Keijo Heljanko

University of Helsinki

FINLAND

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Jarno Niklas Alanko

University of Helsinki

FINLAND

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Manuel Cáceres

Aalto University

FINLAND

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Nicola Rizzo

University of Helsinki

FINLAND

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Tuukka Norri

University of Helsinki

FINLAND

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Altti Maarala

University of Helsinki

FINLAND

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Alexandru I. Tomescu

University of Helsinki

FINLAND

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Teemu Kallonen

Helsinki University Hospital

FINLAND

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Kristoffer Sahlin

Assistant Professor

Stockholm University

SWEDEN

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Kristin Hegstad

Professor II

UiT The Arctic University of Norway

NORWAY

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Saska Dönges

University of Helsinki

FINLAND

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Veli Mäkinen

Research Interests

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Articles (12)

Finding maximal exact matches in graphs

Elastic founder graphs improved and enhanced

Tackling reference bias in genotyping by using founder sequences with PanVC 3

Graphs cannot be indexed in polynomial time for sub-quadratic time string matching, unless SETH fails

Chaining for accurate alignment of erroneous long reads to acyclic variation graphs

On the Complexity of String Matching for Graphs

Algorithms and Complexity on Indexing Founder Graphs

Accurate spliced alignment of long RNA sequencing reads

Distributed hybrid-indexing of compressed pan-genomes for scalable and fast sequence alignment

Founder reconstruction enables scalable and seamless pangenomic analysis

Bacterial genomic epidemiology with mixed samples

Linear-time String Indexing and Analysis in Small Space

Collaborators (12)

Leena Salmela

Keijo Heljanko

Jarno Niklas Alanko

Manuel Cáceres

Nicola Rizzo

Tuukka Norri

Altti Maarala

Alexandru I. Tomescu

Teemu Kallonen

Kristoffer Sahlin

Kristin Hegstad

Saska Dönges

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