Andrew Jones

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Professor

University of Liverpool

United Kingdom

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Recent Grants

Grant: Close

Open source pipelines for integrated metabolomics analysis by NMR and mass spectrometry

Open Date: 2015-11-01

Close Date: 2016-12-31

Grant: Close

Bilateral NSF/BIO-BBSRC: Bayesian Quantitative Proteomics

Open Date: 2015-09-29

Close Date: 2018-09-28

Grant: Close

Biology from bioinformatics: data analytical and visualisations tools to gain new understandings from quantitative mass spectrometry

Open Date: 2015-08-31

Close Date: 2017-08-30

Grant: Close

The PPP-labels software for quantitative proteomics

Open Date: 2014-09-29

Close Date: 2015-09-28

Grant: Close

ProteoFormer - a software toolkit for top-down proteomics

Open Date: 2014-06-30

Close Date: 2015-11-30

Articles (20)

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2024

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2021

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2021

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2020

Collaborators (12)

Kathryn Crouch

Lecturer in Bioinformatics

University of Glasgow

UNITED KINGDOM

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Irene Papatheodorou

Head of Data Science

Earlham Institute

UNITED KINGDOM

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Sandra Orchard

European Bioinformatics Institute

UNITED KINGDOM

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Juri Rappsilber

Technische Universität Berlin

GERMANY

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David Siker Roos

E Otis Kendall Professor of Biology

University of Pennsylvania

UNITED STATES

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Patrick A. Eyers

University of Liverpool

UNITED KINGDOM

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Luana Licata

University of Rome Tor Vergata

ITALY

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Sylvie RICARD-BLUM

Professor

Université Claude Bernard Lyon 1

FRANCE

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Pablo Moreno

European Bioinformatics Institute

UNITED KINGDOM

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Wout Bittremieux

University of Antwerp

BELGIUM

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Zhi Sun

Institute for Systems Biology

UNITED STATES

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Claire Eyers

University of Liverpool

UNITED KINGDOM

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Andrew Jones

Research Interests

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Recent Grants

Articles (20)

Charting the evolutionary path of the SUMO modification system in plants reveals molecular hardwiring of development to stress adaptation

mzIdentML 1.3.0 – Essential progress on the support of crosslinking and other identifications based on multiple spectra

Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome.

Integrated Proteomics Analysis of Baseline Protein Expression in Pig Tissues.

What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species.

SUMOylation of OsPSTOL1 is essential for regulating phosphate starvation responses in rice and <i>Arabidopsis</i>.

Corrigendum: SUMOylation of OsPSTOL1 is essential for regulating phosphate starvation responses in rice and <i>Arabidopsis</i>.

Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.

Assessing Multiple Evidence Streams to Decide on Confidence for Identification of Post-Translational Modifications, within and Across Data Sets

Integrated View of Baseline Protein Expression in Human Tissues

Custom Workflow for the Confident Identification of Sulfotyrosine-Containing Peptides and Their Discrimination from Phosphopeptides.

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023.

MicroAge Mission: Examining the Effects of Microgravity and Electrical Stimulation on the Proteome of Human Tissue-Engineered Muscle Constructs

Profiling the Human Phosphoproteome to Estimate the True Extent of Protein Phosphorylation

Method for Independent Estimation of the False Localization Rate for Phosphoproteomics

Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues

MHCVision: estimation of global and local false discovery rate for MHC class I peptide binding prediction

lcmsWorld: High-Performance 3D Visualization Software for Mass Spectrometry

mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools

Collaborators (12)

Kathryn Crouch

Irene Papatheodorou

Sandra Orchard

Juri Rappsilber

David Siker Roos

Patrick A. Eyers

Luana Licata

Sylvie RICARD-BLUM

Pablo Moreno

Wout Bittremieux

Zhi Sun

Claire Eyers

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