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Ayorinde Afolayan

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Bioinformatician (Phylogenomics)

Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures

Germany

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Recent Grants

Grant: Close

On becoming an impactful, independent environmental surveillance researcher in Africa: The importance of training, collaboration, and research communication

Open Date: 2021-01-01

Close Date: 2021-01-01

Grant: Close

Subgrant to promote sustainable development in bioinformatics to support public health

Open Date: 2021-01-01

Close Date: 2021-01-01

Grant: Close

The gut microbiota of the Fulani

Open Date: 2017-01-01

Close Date: 2017-08-01

Articles (17)

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2026

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2025

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2024

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2024

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2024

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2023

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2023

Collaborators (25)

Thomas Darton

University of Sheffield

UNITED KINGDOM

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Athanasios Michos

Professor of Pediatrics and Infectious Diseases

Ethniko kai Kapodistriako Panepistemio Athenon Iatrike Schole

GREECE

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Markus Göker

Head of Phylogenomics and Nomenclature group

Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures

GERMANY

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Dearbháile Morris

Professor of Antimicrobial Resistance and One Health

National University of Ireland Galway

IRELAND

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Samuel Kariuki

Senior Principal Research Scientist

Kenya Medical Research Institute

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Su Datt Lam

Senior Lecturer

Universiti Kebangsaan Malaysia (UKM)

MALAYSIA

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Sandra Reuter

University Medical Center Freiburg

GERMANY

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James Ussher

University of Otago

NEW ZEALAND

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Abraham Aseffa

Unit Head

Special Programme for Research and Training in Tropical Diseases

SWITZERLAND

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Annamari Heikinheimo

Assistant professor (tenure track)

University of Helsinki

FINLAND

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Erkison Odih

Københavns Universitet

DENMARK

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Uli Klümper

Technische Universität Dresden

GERMANY

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Zamin Iqbal

Professor at Department of Life Sciences

University of Bath

UNITED KINGDOM

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Melita Gordon

Professor

University of Liverpool

UNITED KINGDOM

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Daniel Remondini

Associate Professor

University of Bologna

ITALY

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Danielle Ingle

University of Melbourne

AUSTRALIA

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Patrick Munk

Technical University of Denmark

DENMARK

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Jacqueline (Jackie) Wright

Institute of Environmental Sciences and Research

NEW ZEALAND

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Heike M. Freese

GERMANY

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Gaetan Thilliez

Assistant Professor in Computational Biology

Dublin City University

IRELAND

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Ifeoluwa Akintayo

University at Albany, State University of New York

UNITED STATES

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Isabel Martinez-Alcalá

Universidad Católica San Antonio de Murcia

SPAIN

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Jan P. Meier-Kolthoff

Head of the Augsburg Bioinformatics Core Facility (ABC)

University of Augsburg

GERMANY

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Maria Jorge Campos

Prof. Adjunto

Instituto Politécnico de Leiria

PORTUGAL

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Thomas U. Berendonk

Technische Universität Dresden

GERMANY

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Ayorinde Afolayan

Research Interests

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Recent Grants

Articles (17)

TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity

Genomic characterization of resistant Escherichia coli isolated from household water in municipal Ibadan, Nigeria

Mitigation and detection of putative microbial contaminant reads from long- read metagenomic datasets

Molecular characterization of mupirocin-resistant MRSA from Germany and South Africa

The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health

Double carbapenemases in Klebsiella pneumoniae blood isolates: dissemination in a single medical center via multiple plasmids and a variety of highly efficient clones

Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes

Whole-genome sequencing reveals Enterobacter hormaechei as a key bloodstream pathogen in six tertiary care hospitals in southwestern Nigeria

Decentralising Bioinformatics Capacity: Lessons from Training Hospital Staff and Field Epidemiologists in Nigeria

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi

Assessing the Genomic Landscape of Salmonella enterica Isolated From Cattle Faeces on a Nigerian Farm

Transmissible antimicrobial resistance in <i>Escherichia coli</i> isolated from household drinking water in Ibadan, Nigeria

hAMRonization: Enhancing antimicrobial resistance prediction using the PHA4GE AMR detection specification and tooling

Pepper power: short-term impact of pepper consumption on the gut bacteriome composition in healthy volunteers

TAXAPRO: A Streamlined Pipeline to Analyze Shotgun Metagenomes

Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes

Three Klebsiella pneumoniae lineages causing bloodstream infections variably dominated within a Greek hospital over a 15 year period

Collaborators (25)

Thomas Darton

Athanasios Michos

Markus Göker

Dearbháile Morris

Samuel Kariuki

Su Datt Lam

Sandra Reuter

James Ussher

Abraham Aseffa

Annamari Heikinheimo

Erkison Odih

Uli Klümper

Zamin Iqbal

Melita Gordon

Daniel Remondini

Danielle Ingle

Patrick Munk

Jacqueline (Jackie) Wright

Heike M. Freese

Gaetan Thilliez

Ifeoluwa Akintayo

Isabel Martinez-Alcalá

Jan P. Meier-Kolthoff

Maria Jorge Campos

Thomas U. Berendonk

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