Patrick Munk

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Technical University of Denmark

Denmark

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Professors in Microbiology

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Recent Grants

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Studieophold ved University of California, Berkeley, USA

Open Date: 2016-04-01

Close Date: 2016-07-01

Grant: Close

Ph.d.-studieophold ved University of California, Berkeley, USA

Open Date: 2016-04-01

Close Date: 2016-07-01

Articles (19)

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2024

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2022

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2022

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2022

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2022

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2021

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2021

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2020

Collaborators (28)

Sünje Johanna Pamp

Technical University of Denmark

DENMARK

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Valeria Bortolaia

Statens Serum Institut

DENMARK

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Simon Rasmussen

Professor

University of Copenhagen

DENMARK

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Christian Brinch

Technical University of Denmark

DENMARK

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Hanseob Shin

The University of Iowa

UNITED STATES

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Ana Sofia Ribeiro Duarte

Technical University of Denmark

DENMARK

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Heike Schmitt

Utrecht University

NETHERLANDS

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M.Luz Calle

SPAIN

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Alessandro Fuschi

University of Bologna

ITALY

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Olli Vapalahti

University of Helsinki

FINLAND

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Philip Clausen

Technical University of Denmark

DENMARK

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Judit Szarvas

Københavns Universitet

DENMARK

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Thomas Nordahl Petersen

Technical University of Denmark

DENMARK

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Ole Lund

Technical University of Denmark

DENMARK

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Henry Webel

Københavns Universitet

DENMARK

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Frederik Møller

Technical University of Denmark

DENMARK

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Derya Aytan-Aktug

Technical University of Denmark

DENMARK

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Ravi Kant

University of Helsinki

FINLAND

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Elizabeth Neilson

Københavns Universitet

DENMARK

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Saria Otani

Technical University of Denmark

DENMARK

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Rolf Sommer Kaas

Technical University of Denmark

DENMARK

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Patrick Murigu Kamau Njage

Technical University of Denmark

DENMARK

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Dick Heederik

Professor

Utrecht University

NETHERLANDS

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Dariusz Wasyl

Head of Department/Professor

National Veterinary Research Institute

POLAND

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Jette Sejer Kjeldgaard

Technical University of Denmark

DENMARK

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Marie Louise Jespersen

Technical University of Denmark

DENMARK

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Frank Aarestrup

Professor

Technical University of Denmark

DENMARK

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Hannah-Marie Martiny

Technical University of Denmark

DENMARK

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Patrick Munk

Research Interests

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Recent Grants

Articles (19)

Discovery of Vibrio cholerae in Urban Sewage in Copenhagen, Denmark

Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance

The European livestock resistome

Utilizing co-abundances of antimicrobial resistance genes to identify potential co-selection in the resistome

Flankophile: a bioinformatic pipeline for prokaryotic genomic synteny analysis

ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

MAGICIAN: MAG simulation for investigating criteria for bioinformatic analysis

Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering

Detection of specific uncultured bacteriophages by fluorescence in situ hybridisation in pig microbiome

Association of health, nutrition, and socioeconomic variables with global antimicrobial resistance: a modelling study

Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies

PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest

Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine

A curated data resource of 214K metagenomes for characterization of the global antimicrobial resistome

Global Distribution of mcr Gene Variants in 214K Metagenomic Samples

Genomic evolution of antimicrobial resistance in Escherichia coli

Risk Factors for Antimicrobial Resistance in Turkey Farms: A Cross-Sectional Study in Three European Countries

Extended-spectrum beta-lactamase-producing Escherichia coli and antimicrobial resistance in municipal and hospital wastewaters in Czech Republic: Culture-based and metagenomic approaches.

Collaborators (28)

Sünje Johanna Pamp

Valeria Bortolaia

Simon Rasmussen

Christian Brinch

Hanseob Shin

Ana Sofia Ribeiro Duarte

Heike Schmitt

M.Luz Calle

Alessandro Fuschi

Olli Vapalahti

Philip Clausen

Judit Szarvas

Thomas Nordahl Petersen

Ole Lund

Henry Webel

Frederik Møller

Derya Aytan-Aktug

Ravi Kant

Elizabeth Neilson

Saria Otani

Rolf Sommer Kaas

Patrick Murigu Kamau Njage

Dick Heederik

Dariusz Wasyl

Jette Sejer Kjeldgaard

Marie Louise Jespersen

Frank Aarestrup

Hannah-Marie Martiny

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