Egil Fischer

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Assistant Professor

Utrecht University

Netherlands

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About

Egil Fischer is an Assistant Professor at Universiteit Utrecht, Netherlands. His research primarily focuses on phylodynamics, vaccine efficacy in poultry, antimicrobial resistance, and disease transmission modeling, with recent work addressing Mycobacterium tuberculosis, Escherichia coli, and SARS-CoV-2. He employs Bayesian inference methods to analyze transmission dynamics and health risks in agricultural and urban settings.

Recent Grants

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Deelproject 2 van FIRM-broilers ("Optimizing Flock health and performance by influencing Immune Responsiveness and the gut Microbiome by nutritional interventions in Broilers")

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Collaborators (5)

Arjan Stegeman

Professor

Utrecht University

NETHERLANDS

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Clazien J. de Vos

Wageningen University & Research

NETHERLANDS

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Don Klinkenberg

National Institute for Public Health and the Environment

NETHERLANDS

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Aram Swinkels

University of Oxford

UNITED KINGDOM

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Francisca Velkers

Utrecht University

NETHERLANDS

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Egil Fischer

Research Interests

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About

Recent Grants

Articles (20)

Phylodynamic assessment of SNP distances from whole genome sequencing for determining Mycobacterium tuberculosis transmission

A vaccine programme comprising GA08 (GI-27) and Mass (GI-1) strains prevents DMV1639 (GI-17) infectious bronchitis virus transmission among broiler chickens

Selection for amoxicillin-, doxycycline-, and enrofloxacin-resistant Escherichia coli at concentrations lower than the ECOFF in broiler-derived cecal fermentations

Extended period of selection for antimicrobial resistance due to recirculation of persistent antimicrobials in broilers

Quantifying health risks from ESBL-producing Escherichia coli in Dutch broiler production chains and potential interventions using compartmental models

A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms

Comparing the transmission of carbapenemase-producing and extended-spectrum beta-lactamase-producing Escherichia coli between broiler chickens

A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms

A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms

Evaluation of foot and mouth disease control measures: Simulating two endemic areas of Thailand

Comparing the transmission of carbapenemase-producing and extended-spectrum beta-lactamase-producing<i> Escherichia</i><i> coli</i> between broiler chickens

Contribution of cats and dogs to SARS-CoV-2 transmission in households

SARS‐CoV‐2 infection in cats and dogs in infected mink farms

Quantitative Risk Assessment for the Introduction of Carbapenem-Resistant Enterobacteriaceae (CPE) into Dutch Livestock Farms

Quantitative Risk Assessment for the Introduction of Carbapenem-Resistant Enterobacteriaceae (CPE) into Dutch Livestock Farms

Conserved developmental trajectories of the cecal microbiota of broiler chickens in a field study

Estimating plasmid conjugation rates: A new computational tool and a critical comparison of methods

Infection Transmission Ontology: Standardization of Infection Transmission Data

SARS-CoV-2 infection in cats and dogs in infected mink farms

Second compartment widens plasmid invasion conditions: Two-compartment pair-formation model of conjugation in the gut

Collaborators (5)

Arjan Stegeman

Clazien J. de Vos

Don Klinkenberg

Aram Swinkels

Francisca Velkers

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