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Gerry Tonkin-Hill

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Group Leader

Peter MacCallum Cancer Institute

Australia

Research Interests

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Professors in Australia Professors in Microbiology Microbiology professors in Australia

Recent Grants

Grant: Open

Fungal Genomics and Antagonistic Community Interactions

Open Date: 2025-01-01

Close Date: 2027-01-01

Grant: Open

Population genomic methods for modelling bacterial pathogen evolution

Open Date: 2024-01-01

Close Date: 2027-01-01

Grant: Open

Scalable genotype to phenotype prediction for pathogen tracking and diagnostics

Open Date: 2024-01-01

Close Date: 2029-01-01

Grant: Close

University of Cambridge - Mathematical Genomics and Medicine

Open Date: 2016-10-01

Close Date: 2020-09-30

Articles (19)

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2026

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2023

Collaborators (9)

Rebecca Gladstone

University of Oslo

NORWAY

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Jada Hackman

University of Edinburgh

UNITED KINGDOM

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Mario Ramirez

Associate Professor

Universidade do Porto Faculdade de Medicina

PORTUGAL

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Teemu Kallonen

Helsinki University Hospital

FINLAND

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Sudaraka Mallawaarachchi

University of Oslo

NORWAY

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Sarah Baines

University of Melbourne

AUSTRALIA

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David McMillan

University of Wollongong

AUSTRALIA

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Thibaut Morel-Journel

Associate Professor

Université Sorbonne Paris Nord - Campus de Bobigny

FRANCE

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Henri Pesonen

Assistant Professor

University of Tampere

FINLAND

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Gerry Tonkin-Hill

Research Interests

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Recent Grants

Articles (19)

Strain-level transmission inference across multi-kingdom metagenomic data using TRACS

Quantifying the effects of antibiotic resistance and within-host competition on strain fitness in Streptococcus pneumoniae

Basic reproduction number varies markedly between closely related pandemic Escherichia coli clones

Within-host bacterial evolution and the emergence of pathogenicity

Plasmid-driven strategies for clone success in Escherichia coli

Invasive Streptococcus dysgalactiae subspecies equisimilis compared with Streptococcus pyogenes in Australia, 2011–23, and the emergence of a multi-continent stG62647 lineage: a retrospective clinical and genomic epidemiology study

Measuring changes in Plasmodium falciparum census population size in response to sequential malaria control interventions

Temporal and geographical lineage dynamics of invasive Streptococcus pyogenes in Australia from 2011 to 2023: a retrospective, multicentre, clinical and genomic epidemiology study

Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs

Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis.

Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study.

Evaluating methods for identifying and quantifying Streptococcus pneumoniae co-colonization using next-generation sequencing data

Overlapping Streptococcus pyogenes and Streptococcus dysgalactiae subspecies equisimilis household transmission and mobile genetic element exchange

Detecting co-selection through excess linkage disequilibrium in bacterial genomes

Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe.

Mutational spectra are associated with bacterial niche

Mge-cluster: a reference-free approach for typing bacterial plasmids

Accurate and fast graph-based pangenome annotation and clustering with ggCaller

Challenges in prokaryote pangenomics

Collaborators (9)

Rebecca Gladstone

Jada Hackman

Mario Ramirez

Teemu Kallonen

Sudaraka Mallawaarachchi

Sarah Baines

David McMillan

Thibaut Morel-Journel

Henri Pesonen

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