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Josep M Serra-Diaz

Research Assistant Professor

University of Connecticut
Country flagUnited States

Research Interests

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Articles (16)

Aim Species occurrence data are valuable information that enables one to estimate geographical distributions, characterize niches and their evolution, and guide spatial conservation planning. Rapid increases in species occurrence data stem from increasing digitization and aggregation efforts, and citizen science initiatives. However, persistent quality issues in occurrence data can impact the accuracy of scientific findings, underscoring the importance of filtering erroneous occurrence records in biodiversity analyses. Innovation We introduce an R package, occTest, that synthesizes a growing open‐source ecosystem of biodiversity cleaning workflows to prepare occurrence data for different modelling applications. It offers a structured set of algorithms to identify potential problems with species occurrence records by employing a hierarchical organization of multiple tests. The workflow has a hierarchical structure organized in test Phases (i.e. cleaning vs. testing) that encompass different testBlocks grouping different testTypes (e.g. environmental outlier detection ), which may use different testMethods (e.g. Rosner test, jacknife, etc.). Four different testBlocks characterize potential problems in geographic, environmental, human influence and temporal dimensions. Filtering and plotting functions are incorporated to facilitate the interpretation of tests. We provide examples with different data sources, with default and user‐defined parameters. Compared to other available tools and workflows, occTest offers a comprehensive suite of integrated tests, and allows multiple methods associated with each test to explore consensus among data cleaning methods. It uniquely incorporates both coordinate accuracy analysis and environmental analysis of occurrence records. Furthermore, it provides a hierarchical structure to incorporate future tests yet to be developed. Main conclusions occTest will help users understand the quality and quantity of data available before the start of data analysis, while also enabling users to filter data using either predefined rules or custom‐built rules. As a result, occTest can better assess each record's appropriateness for its intended application.

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2024

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2022

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2022

Collaborators (47)

Daniel Park

Assistant Professor

Purdue University

UNITED STATES
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Xiao Feng

-

UNITED STATES
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Hans Henrik Bruun

associate professor

University of Copenhagen

DENMARK
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Chaeho Byun

Assistant Professor

Andong National University

SOUTH KOREA
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Lidong Mo

Nankai University

CHINA
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Joseph Burger

Assistant Professor

University of Kentucky

UNITED STATES
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Raúl García-Valdés

Profesor Permanente Laboral

Universidad Rey Juan Carlos - Campus de Móstoles

SPAIN
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Wolf Eiserhardt

Professor

Aarhus University

DENMARK
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John Poulsen

Adjunct Professor

Duke University

UNITED STATES
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Yadvinder Malhi

University of Oxford

UNITED KINGDOM
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Bogdan Jaroszewicz

Head of the Station/Professor

University of Warsaw

POLAND
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Jane Catford

King’s College London

UNITED KINGDOM
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Jens-Christian Svenning

Professor

Aarhus University

DENMARK
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Cory Merow

-

UNITED STATES
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José María Iriondo

Full Professor

Universidad Rey Juan Carlos Escuela Superior de Ciencias Experimentales y Tecnología

SPAIN
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Jamie Michael Kass

Associate Professor

Tohoku University

JAPAN
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Naia Morueta-Holme

Københavns Universitet

DENMARK
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Emil Cienciala

Global Change Research Institute CAS

CZECH REPUBLIC
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Clara Antón-Fernández

Senior Researcher – Beatriz Galindo Programme

Universidad de Valladolid

SPAIN
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Erica Newman

-

UNITED STATES
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Robert Anderson

The Graduate Center, CUNY

UNITED STATES
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Nadejda Soudzilovskaia

Professor

Hasselt University

BELGIUM
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Eric Marcon

Researcher

AgroParisTech

FRANCE
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Laura Dee

Assistant Professor of Large-Scale Ecology

University of Colorado Boulder

UNITED STATES
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Christian Salas-Eljatib

Full Professor

Universidad de Chile

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Junho Lee

Assistant Professor

Louisiana State University

UNITED STATES
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Adam Wilson

Associate Professor

State University of New York at Buffalo

UNITED STATES
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Simon Hart

Lecturer

University of Queensland

AUSTRALIA
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Robert Peet

Professor

University of North Carolina at Chapel Hill

UNITED STATES
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Alexandre F Souza

Ajunct IV Professor

Federal University of Rio Grande do Norte

BRAZIL
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Sebastian Kepfer Rojas

Københavns Universitet

DENMARK
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Jean‐Claude Gégout

AgroParisTech

FRANCE
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Adam R. Martin

Associate Professor

University of Toronto

CANADA
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Vivian Kvist Johannsen

Københavns Universitet

DENMARK
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Helder Viana

Instituto Politécnico de Leiria

PORTUGAL
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Franziska Schrodt

Assistant Professor

University of Nottingham

UNITED KINGDOM
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Brian J. Enquist

-

UNITED STATES
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Roberto Cazzolla Gatti

Associate Professor

University of Bologna

ITALY
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Carlos Lara-Romero

Assistant Professor

Universidad Rey Juan Carlos

SPAIN
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Tianhua He

Murdoch University

AUSTRALIA
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Vanessa Minden

Vrije Universiteit Brussel

BELGIUM
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Eurídice Nora Honorio Coronado

University of St. Andrews

UNITED KINGDOM
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Stanisław Miścicki

Prof

Szkola Glowna Gospodarstwa Wiejskiego

POLAND
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Hans ter Steege

Professor by Special Appointment

Utrecht University

NETHERLANDS
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Miroslav Svoboda

Professor

Czech University of Life Sciences Prague

CZECH REPUBLIC
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Tommaso Jucker

Academic , Professor of Forest Ecology and Global Change

University of Bristol

UNITED KINGDOM
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Craig D. Allen

-

UNITED STATES
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