Josep M Serra-Diaz

Research Assistant Professor

University of Connecticut
Country flag
United States

Research Interests

Explore related searches

Contact this professor

LinkedIn
ORCID
Google Scholar
Academic Page

Articles (16)

<scp>occTest</scp>: An integrated approach for quality control of species occurrence data

Aim Species occurrence data are valuable information that enables one to estimate geographical distributions, characterize niches and their evolution, and guide spatial conservation planning. Rapid increases in species occurrence data stem from increasing digitization and aggregation efforts, and citizen science initiatives. However, persistent quality issues in occurrence data can impact the accuracy of scientific findings, underscoring the importance of filtering erroneous occurrence records in biodiversity analyses. Innovation We introduce an R package, occTest, that synthesizes a growing open‐source ecosystem of biodiversity cleaning workflows to prepare occurrence data for different modelling applications. It offers a structured set of algorithms to identify potential problems with species occurrence records by employing a hierarchical organization of multiple tests. The workflow has a hierarchical structure organized in test Phases (i.e. cleaning vs. testing) that encompass different testBlocks grouping different testTypes (e.g. environmental outlier detection ), which may use different testMethods (e.g. Rosner test, jacknife, etc.). Four different testBlocks characterize potential problems in geographic, environmental, human influence and temporal dimensions. Filtering and plotting functions are incorporated to facilitate the interpretation of tests. We provide examples with different data sources, with default and user‐defined parameters. Compared to other available tools and workflows, occTest offers a comprehensive suite of integrated tests, and allows multiple methods associated with each test to explore consensus among data cleaning methods. It uniquely incorporates both coordinate accuracy analysis and environmental analysis of occurrence records. Furthermore, it provides a hierarchical structure to incorporate future tests yet to be developed. Main conclusions occTest will help users understand the quality and quantity of data available before the start of data analysis, while also enabling users to filter data using either predefined rules or custom‐built rules. As a result, occTest can better assess each record's appropriateness for its intended application.

Year:

2024

Collaborators (44)

Daniel Park

Assistant Professor

Purdue University

UNITED STATES

Xiao Feng

-

UNITED STATES

Hans Henrik Bruun

associate professor

University of Copenhagen

DENMARK

Chaeho Byun

Assistant Professor

Andong National University

SOUTH KOREA

Lidong Mo

ETH Zürich

SWITZERLAND

Joseph Burger

Assistant Professor

University of Kentucky

UNITED STATES

Raúl García-Valdés

Profesor Ayudante Doctor

Universidad Rey Juan Carlos - Campus de Móstoles

SPAIN

Wolf Eiserhardt

Associate Professor

Aarhus University

DENMARK

John Poulsen

Adjunct Professor

Duke University

UNITED STATES

Yadvinder Malhi

University of Oxford

UNITED KINGDOM

Bogdan Jaroszewicz

Head of the Station/Professor

University of Warsaw

POLAND

Jane Catford

King’s College London

UNITED KINGDOM

Jens-Christian Svenning

Professor

Aarhus University

DENMARK

Cory Merow

-

UNITED STATES

José María Iriondo

Full Professor

Universidad Rey Juan Carlos Escuela Superior de Ciencias Experimentales y Tecnología

SPAIN

Jamie Michael Kass

Associate Professor

Tohoku University

JAPAN

Naia Morueta-Holme

Københavns Universitet

DENMARK

Emil Cienciala

Global Change Research Institute CAS

CZECH REPUBLIC

Clara Antón-Fernández

Research Professor

Norwegian Institute of Bioeconomy Research

NORWAY

Erica Newman

-

UNITED STATES

Robert Anderson

The Graduate Center, CUNY

UNITED STATES

Nadejda Soudzilovskaia

Full Professor

Hasselt University

BELGIUM

Laura Dee

Assistant Professor of Large-Scale Ecology

University of Colorado Boulder

UNITED STATES

Junho Lee

Assistant Professor

Louisiana State University

UNITED STATES

Adam Wilson

Associate Professor

State University of New York at Buffalo

UNITED STATES

Simon Hart

Lecturer

University of Queensland

AUSTRALIA

Robert Peet

Professor

University of North Carolina at Chapel Hill

UNITED STATES

Sebastian Kepfer Rojas

Københavns Universitet

DENMARK

Jean‐Claude Gégout

Université de Lorraine

FRANCE

Adam R. Martin

-

CANADA

Vivian Kvist Johannsen

Københavns Universitet

DENMARK

Helder Viana

Instituto Politécnico de Leiria

PORTUGAL

Franziska Schrodt

Assistant Professor

University of Nottingham

UNITED KINGDOM

Brian J. Enquist

-

UNITED STATES

Roberto Cazzolla Gatti

Associate Professor

University of Bologna

ITALY

Carlos Lara-Romero

Assistant Professor

Universidad Rey Juan Carlos

SPAIN

Tianhua He

Murdoch University

AUSTRALIA

Vanessa Minden

Vrije Universiteit Brussel

BELGIUM

Eurídice Nora Honorio Coronado

University of St. Andrews

UNITED KINGDOM

Stanisław Miścicki

Prof., Head of Department

Szkola Glowna Gospodarstwa Wiejskiego

POLAND

Hans ter Steege

Professor by Special Appointment

Utrecht University

NETHERLANDS

Miroslav Svoboda

Professor

Czech University of Life Sciences Prague

CZECH REPUBLIC

Tommaso Jucker

University of Bristol

UNITED KINGDOM

Craig D. Allen

-

UNITED STATES
Social connections

How do I reach out?

Sign in for free to see their profile details and contact information.

Meet Kite AI