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Juan Antonio Vizcaino

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Proteomics and Metabolomics Team Leader

European Bioinformatics Institute

United Kingdom

Research Interests

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Recent Grants

Grant: Open

2023BBSRC-NSF/BIO: Making Single-Cell Proteomics data FAIR

Open Date: 2025-03-01

Close Date: 2028-02-28

Grant: Open

MetabolomeXchange: International Data Exchange and Data Representation Standards for Metabolomics

Open Date: 2024-11-01

Close Date: 2027-04-01

Grant: Open

The Open Data Exchange Ecosystem in Proteomics: Evolving its Utility

Open Date: 2024-04-30

Close Date: 2026-12-31

Grant: Close

BBSRC-NSF/BIO. Globally harmonized re-analysis of Data Independent Acquisition (DIA) proteomics datasets enables the creation of new resources

Open Date: 2023-04-19

Close Date: 2026-04-18

Grant: Close

Extending the PRIDE database ecosystem: PRIDE-Controlled Access (PRIDE-CA) and the PRIDE-Knowledgebase (PRIDE-KB)

Open Date: 2022-06-01

Close Date: 2026-05-31

Articles (20)

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Collaborators (28)

Elliott J. Price

Masaryk University

CZECH REPUBLIC

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Michael Levin

Director of Research & Professor of Experimental Medicine

Imperial College London

UNITED KINGDOM

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Timothy Ebbels

Imperial College London

UNITED KINGDOM

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Zoya Ignatova

Professor in RNA Biochemistry

Universität Hamburg

GERMANY

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John Atkins

Research Professor

University College Cork

IRELAND

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Zhen Dong

Research Assistant Professor

Westlake University

CHINA

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Ronald Hay

Professor of Molecular Biology

University of Dundee

UNITED KINGDOM

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Haoqi Zhao

Assistant Professor

Stanford University

UNITED STATES

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Jo McEntyre

EMBL-European Bioinformatics Institute

UNITED KINGDOM

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Eric Deutsch

Senior Research Scientist

Institute for Systems Biology

UNITED STATES

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Julian Uszkoreit

Ruhr-Universität Bochum

GERMANY

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Markus Ralser

Senior Group Leader

The Francis Crick Institute

UNITED KINGDOM

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Christina Ernst

Functional Genomics Team Leader

European Bioinformatics Institute

UNITED KINGDOM

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Justin van der Hooft

Wageningen University & Research

NETHERLANDS

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Mallory Freeberg

Human Genomics Team lead

European Bioinformatics Institute

UNITED KINGDOM

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Melissa Harrison

Group Team Leader

European Bioinformatics Institute

UNITED KINGDOM

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Catherine Brooksbank

Head of Training

European Bioinformatics Institute

UNITED KINGDOM

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Ivo Fierro Monti

Premier Assistant/Responsable de Recherche

University of Lausanne

SWITZERLAND

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Kathleen Watt

Karolinska Institutet

SWEDEN

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Ivo Hendriks

Associate Professor

University of Copenhagen

DENMARK

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Danny D Nedialkova

Professor of Biochemistry

Max Perutz Labs

AUSTRIA

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Ewy A. Mathé

Director of Informatics

UNITED STATES

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Petra Van Damme

Professor at Ghent University

Ghent University

BELGIUM

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Andrew Dowsey

Professor at Bristol Veterinary School

University of Bristol

UNITED KINGDOM

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Andrew Jones

Professor

University of Liverpool

UNITED KINGDOM

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Julie Aspden

Group Leader and University Academic Fellow

University of Leeds

UNITED KINGDOM

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Shintaro Iwasaki

University of Tokyo

JAPAN

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Paulina Podszywalow-Bartnicka

adiunkt

Instytut Biologii Doswiadczalnej im M Nenckiego Polskiej Akademii Nauk

POLAND

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Juan Antonio Vizcaino

Research Interests

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Recent Grants

Articles (20)

A Landscape Analysis of Human SUMOylation.

EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2025

An expanded reference catalog of translated open reading frames for biomedical research

Computational metabolomics at scale: from open data to insight

Expression Atlas in 2026: enabling FAIR and open expression data through community collaboration and integration.

AI proteomics: from protein identification to virtual cells

Expanding the human proteome with microproteins and peptideins

An AI-Ready Phosphorylation Meta-Analysis for Saccharomyces cerevisiae

Author Correction: Community benchmarking and evaluation of human unannotated microprotein detection by mass spectrometry based proteomics

The ProteomeXchange consortium in 2026: making proteomics data FAIR

Structure-centric searching enables global mapping of the public metabolome

Integrating multi-omics technologies to decipher microbiome functions.

Network-based integration of metabolomics data from large-scale repositories.

The need for standardization and improved open (meta)data practices in metaproteomics.

Human SRD5A1 as a case of gene expression indel-resistance in triple-coding region.

Unlocking the Next Decade of Proteomics with Standardized, Structured Metadata

Translon: a single term for translated regions

mzPeak: Designing a Scalable, Interoperable, and Future-Ready Mass Spectrometry Data Format

Community benchmarking and evaluation of human unannotated microprotein detection by mass spectrometry based proteomics

IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank.

Collaborators (28)

Elliott J. Price

Michael Levin

Timothy Ebbels

Zoya Ignatova

John Atkins

Zhen Dong

Ronald Hay

Haoqi Zhao

Jo McEntyre

Eric Deutsch

Julian Uszkoreit

Markus Ralser

Christina Ernst

Justin van der Hooft

Mallory Freeberg

Melissa Harrison

Catherine Brooksbank

Ivo Fierro Monti

Kathleen Watt

Ivo Hendriks

Danny D Nedialkova

Ewy A. Mathé

Petra Van Damme

Andrew Dowsey

Andrew Jones

Julie Aspden

Shintaro Iwasaki

Paulina Podszywalow-Bartnicka

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