Justin Shaffer

Assistant Professor

California State University, Fresno

United States

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About

Justin Shaffer is an Assistant Professor at California State University, Fresno, USA. His research primarily focuses on microbiome analysis, metagenomics, and the interplay between environmental factors and gut physiology. Recent publications include investigations into the effects of ambient air pollutants on infant gut microbiota and the evaluation of various sequencing methodologies for epidemiological studies.

Articles (10)

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2024

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2023

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2022

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2022

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2022

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2022

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2022

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2022

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2022

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2022

Collaborators (22)

Daniel L. Distel

Research professor

Northeastern University

UNITED STATES

Justin Shaffer

Research Interests

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About

Articles (10)

Peripheral neuronal activation shapes the microbiome and alters gut physiology

Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies.

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Enhancing untargeted metabolomics using metadata-based source annotation

Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions

A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities

Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype

Postnatal exposure to ambient air pollutants is associated with the composition of the infant gut microbiota at 6-months of age

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases

Collaborators (22)

Daniel L. Distel

Gregory Mayer

Daniel Petras

Abigail Johnson

Mads Albertsen

Daniela Vargas-Robles

Dana Withrow

Scott Jackson

Anton Lavrinienko

Jaime Huerta-Cepas

Luke Thompson

Ezequiel Marzinelli

Smruthi Karthikeyan

Rob Knight

Qiyun Zhu

Wout Bittremieux

Dennis Wolan

Candace L Williams

Sebastian Böcker

Austin D. Swafford

Søren Michael Karst

Louis-Felix NOTHIAS

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