Kosuke Ogata

Assistant Professor

Kyoto University

Japan

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About

Dr. Kosuke Ogata is an Assistant Professor at Kyoto University, Japan. His research interests include protein dynamics, peptide identification, and RNA modification mechanisms. He has contributed significantly to the field with recent articles focusing on the mitotic STAG3-cohesin complex, deep learning models for peptide prediction, and innovative methods for m6A demethylation.

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2025

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UNITED STATES

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Yasushi Ishihama

教授 / Professor

Kyoto University

JAPAN

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Norihito Arichi

Assistant Professor

Kyoto University

JAPAN

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Kosuke Ogata

Research Interests

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About

Articles (20)

The mitotic STAG3–cohesin complex shapes male germline nucleome

UniScore, a Unified and Universal Measure for Peptide Identification by Multiple Search Engines

Leveraging pretrained deep protein language model to predict peptide collision cross section

Receptor-independent regulation of Gα13 by alpha-1-antitrypsin C-terminal peptides

Highly sequence-specific, timing-controllable m6A demethylation by modulating RNA-binding affinity of m6A erasers

Visible light-mediated photocatalytic coupling between tetrazoles and carboxylic acids for biomolecule labelling

Visible light-mediated photocatalytic coupling between tetrazoles and carboxylic acids for biomolecule labelling

Highly sequence-specific, timing-controllable m6A demethylation by modulating RNA-binding affinity of m6A erasers

High-Recovery Desalting Tip Columns for a Wide Variety of Peptides in Mass Spectrometry-Based Proteomics

AP-1B regulates interactions of epithelial cells and intraepithelial lymphocytes in the intestine

Acetic Acid Ion Pairing Additive for Reversed-Phase HPLC Improves Detection Sensitivity in Bottom-up Proteomics Compared to Formic Acid

Motif-Targeting Phosphoproteome Analysis of Cancer Cells for Profiling Kinase Inhibitors

Ubiquitination at the lysine 27 residue of the parkin ubiquitin-like domain is suggestive of a new mechanism of parkin activation

Motif-centric phosphoproteomics to target kinase-mediated signaling pathways

Nanoscale Solid-Phase Isobaric Labeling for Multiplexed Quantitative Phosphoproteomics

IRAK1-dependent Regnase-1-14-3-3 complex formation controls Regnase-1-mediated mRNA decay

Sequence-Specific Model for Predicting Peptide Collision Cross Section Values in Proteomic Ion Mobility Spectrometry

Phosphatidylserine-deficient small extracellular vesicle (sEV) is a major somatic cell-derived sEV subpopulation in blood

CoolTip: Low-Temperature Solid-Phase Extraction Microcolumn for Capturing Hydrophilic Peptides and Phosphopeptides

Extending the Separation Space with Trapped Ion Mobility Spectrometry Improves the Accuracy of Isobaric Tag-Based Quantitation in Proteomic LC/MS/MS

Collaborators (11)

Hiroki Akiba

Miki Imanishi

Takuya Kubo

Masanori Yoshinaga

Shosei Yoshida

Masahiro Nagano

Takashi Mino

Eisuke Kanao

Chia-Feng Tsai

Yasushi Ishihama

Norihito Arichi

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