Philip Clausen

Technical University of Denmark

Denmark

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Professors in Microbiology

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Articles (16)

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2025

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2025

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2024

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2024

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2024

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2024

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2023

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2023

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2022

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2022

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2022

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2022

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2022

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2021

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2021

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2021

Collaborators (21)

Christian Brinch

Technical University of Denmark

DENMARK

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Alexey Gurevich

Junior Professor of Bioinformatics

Saarland University

GERMANY

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Ana Sofia Ribeiro Duarte

Technical University of Denmark

DENMARK

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Jakob Nissen

Assistant Professor

University of Copenhagen

DENMARK

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Francesco Beghini

Yale University

UNITED STATES

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Mirko Trajkovski

Full Professor

University of Geneva, Faculty of Medicine

SWITZERLAND

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Judit Szarvas

Københavns Universitet

DENMARK

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Thomas Nordahl Petersen

Technical University of Denmark

DENMARK

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Andrew Warren

Research Assistant Professor

University of Virginia

UNITED STATES

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Ole Lund

Technical University of Denmark

DENMARK

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Derya Aytan-Aktug

Technical University of Denmark

DENMARK

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Rolf Sommer Kaas

Technical University of Denmark

DENMARK

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Alexander Sczyrba

Professor for Computational Metagenomics

Bielefeld University

GERMANY

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Henrik Nielsen

Technical University of Denmark

DENMARK

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Zhong Wang

Adjunct Professor

University of California Merced

UNITED STATES

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Piotr Wojtek Dabrowski

HTW Berlin - University of Applied Sciences

GERMANY

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Patrick Munk

Technical University of Denmark

DENMARK

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Nils Peder Willassen

Prof

UiT The Arctic University of Norway

NORWAY

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Frank Aarestrup

Professor

Technical University of Denmark

DENMARK

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My VT Phan

Assistant Professor

London School of Hygiene & Tropical Medicine

UNITED KINGDOM

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Hannah-Marie Martiny

Technical University of Denmark

DENMARK

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Philip Clausen

Research Interests

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Articles (16)

Assembly-free typing of Nanopore and Illumina data through proximity scoring with KMA

Metagenomic sequencing of mpox virus clade Ib lesions identifies possible bacterial and viral co-infections in hospitalized patients in eastern DRC

The European livestock resistome

SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects

ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

NanoMGT: Marker gene typing of low complexity mono-species metagenomic samples using noisy long reads

Nanopore sequencing technology for clinical diagnosis of infectious diseases where laboratory capacity is meager: A case report

Scaling Neighbor-Joining to One Million Taxa with Dynamic and Heuristic Neighbor-Joining

Critical Assessment of Metagenome Interpretation: the second round of challenges.

SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies

PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest

Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine

ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes

Predicting Antimicrobial Resistance Using Partial Genome Alignments

Automated download and clean-up of family specific databases for kmer-based virus identification

MINTyper: An outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads

Collaborators (21)

Christian Brinch

Alexey Gurevich

Ana Sofia Ribeiro Duarte

Jakob Nissen

Francesco Beghini

Mirko Trajkovski

Judit Szarvas

Thomas Nordahl Petersen

Andrew Warren

Ole Lund

Derya Aytan-Aktug

Rolf Sommer Kaas

Alexander Sczyrba

Henrik Nielsen

Zhong Wang

Piotr Wojtek Dabrowski

Patrick Munk

Nils Peder Willassen

Frank Aarestrup

My VT Phan

Hannah-Marie Martiny

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