Shalin Naik
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Laboratory Head
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About
Shalin Naik is the Laboratory Head at the Walter and Eliza Hall Institute of Medical Research in Australia. His research focuses on hematopoiesis, dendritic cell development, and the application of single-cell and multi-omics technologies to cancer biology. Recent publications explore subjects such as ZBTB11 deficiency, cellular barcoding in cancer heterogeneity, and the transcriptomic profiling of retinal pigment epithelium derived from human pluripotent stem cells.
Recent Grants
Grant: Close
Identification of haematopoietic stem and progenitor cell subpopulations.
Open Date: 2017-01-01
Close Date: 2020-01-01
Grant: Close
The precise steps in dendritic cell development.
Open Date: 2016-01-01
Close Date: 2018-01-01
Grant: Close
Deciphering tumour heterogeneity of breast cancer metastases using barcoded patient derived xenografts.
Open Date: 2016-01-01
Close Date: 2018-01-01
Grant: Close
Finding the genes that generate the 'immune-initiating' dendritic cells
Open Date: 2014-01-01
Close Date: 2016-01-01
Grant: Close
A virtual map of haematopoiesis using cellular barcoding
Open Date: 2008-01-01
Close Date: 2015-01-01
Articles (10)
Year:
2023
Hematopoiesis produces diverse blood cell lineages to meet the basal needs and sudden demands of injury or infection. A rapid response to such challenges requires the expansion of specific lineages and a prompt return to balanced steady-state levels, necessitating tightly coordinated regulation. Previously we identified a requirement for the zinc finger and broad complex, tramtrak, bric-a-brac domain–containing 11 (ZBTB11) transcription factor in definitive hematopoiesis using a forward genetic screen for zebrafish myeloid mutants. To understand its relevance to mammalian systems, we extended these studies to mice. When Zbtb11 was deleted in the hematopoietic compartment, embryos died at embryonic day (E) 18.5 with hematopoietic failure. Zbtb11 hematopoietic knockout (Zbtb11hKO) hematopoietic stem cells (HSCs) were overabundantly specified from E14.5 to E17.5 compared with those in controls. Overspecification was accompanied by loss of stemness, inability to differentiate into committed progenitors and mature lineages in the fetal liver, failure to seed fetal bone marrow, and total hematopoietic failure. The Zbtb11hKO HSCs did not proliferate in vitro and were constrained in cell cycle progression, demonstrating the cell-intrinsic role of Zbtb11 in proliferation and cell cycle regulation in mammalian HSCs. Single-cell RNA sequencing analysis identified that Zbtb11-deficient HSCs were underrepresented in an erythroid-primed subpopulation and showed downregulation of oxidative phosphorylation pathways and dysregulation of genes associated with the hematopoietic niche. We identified a cell-intrinsic requirement for Zbtb11-mediated gene regulatory networks in sustaining a pool of maturation-capable HSCs and progenitor cells.
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2023
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2023
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2022
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2021
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2021
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2021
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2021
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2020
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2020
Collaborators (11)
Marco Colonna
Professor
Washington University in St. Louis
Lev M. Kats
University of Melbourne
Kelly L. Rogers
Laboratory Head, Dynamic Imaging & Centre Manager
Walter and Eliza Hall Institute of Medical Research
Maria-Cristina Keightley
Lab Head / Senior Lecturer
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Grace E. Lidgerwood
-
Peter Diakumis
-
Erica Fletcher
Professor
University of Melbourne
Delphine Merino
Laboratory Head
-
Graham J. Lieschke
MONASH UNIVERSITY
Juliana Idoyaga
Assistant Professor
Stanford University
Shian Su
Walter and Eliza Hall Institute of Medical Research
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