Shinichi Sunagawa

Associate Professor of Microbiome Research

ETH Zürich

Switzerland

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About

Shinichi Sunagawa is an Associate Professor of Microbiome Research at ETH Zurich, Switzerland. His research focuses on microbial ecology, particularly in relation to environmental gradients, host-level biodiversity, and the dynamics of microbiomes in various ecosystems. Recent articles authored by Professor Sunagawa include studies on dark CO 2 fixation in estuarine wetland microbiomes, coral reef microbiome networks, and the interactions between plant microbiota and their hosts.

Articles (22)

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2025

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2023

Collaborators (20)

Jan Roelof van der Meer

Professor

University of Lausanne

SWITZERLAND

Shinichi Sunagawa

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Articles (22)

Assessing environmental gradients in relation to dark CO 2 fixation in estuarine wetland microbiomes

Host-level biodiversity shapes the dynamics and networks within the coral reef microbiome

The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities

Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions

mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations

SPIRE: a Searchable, Planetary-scale mIcrobiome REsource

Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores

Assessing microbiome population dynamics using wild-type isogenic standardized hybrid (WISH)-tags

Plant microbiota feedbacks through dose-responsive expression of general non-self response genes

Inducing novel endosymbioses by implanting bacteria in fungi.

Salmonella Typhimurium screen identifies shifts in mixed-acid fermentation during gut colonization.

The NEREA Augmented Observatory: an integrative approach to marine coastal ecology.

Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean

Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean.

Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition.

Pervasive tandem duplications and convergent evolution shape coral genomes.

Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals.

Metabolic landscape of the male mouse gut identifies different niches determined by microbial activities.

Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation

Diversity of the Pacific Ocean coral reef microbiome.

Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes.

Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems.

Collaborators (20)

Jan Roelof van der Meer

Peter Mueller

Guillaume Bourdin

Corinne DA SILVA

Christian R. Voolstra

Nicolas Cassar

Nicola Zamboni

S. Agustí

Alexandre Ottaviani

Jason Woodhouse

Yassine Cherrak

Claudia Pogoreutz

Karine Labadie

Qing Li

Wolfgang Streit

Thomas Schmidt

Olga Sánchez

Julia A. Vorholt

Gabriella Cosmo Petti

Jean-Marc AURY

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