Stephen Fried

Assistant Professor

Johns Hopkins University

United States

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Stephen Fried is an Assistant Professor at Johns Hopkins University, United States. His research focuses on protein misfolding, oxidative stress responses, and the structural dynamics of proteins, as evident from his recent publications. He investigates the implications of protein structure on biological functions and aging through advanced simulations and experimental techniques.

Articles (19)

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2025

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UNITED STATES

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Cynthia Wolberger

Johns Hopkins University School of Medicine

UNITED STATES

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Robin Krystufek

Institute of Organic Chemistry and Biochemistry

CZECH REPUBLIC

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Margaret Johnson

Assistant Professor

Johns Hopkins University

UNITED STATES

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Piyoosh Sharma

Research Assistant Professor

Washington University in St. Louis

UNITED STATES

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Stephen Fried

Research Interests

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About

Articles (19)

Investigation of the global translational response to oxidative stress in the model archaeon Haloferax volcanii reveals untranslated small RNAs with ribosome occupancy

Non-native entanglement protein misfolding observed in all-atom simulations and supported by experimental structural ensembles

An intrinsically disordered region of Ubp10 regulates its binding and activity on ubiquitinated histone substrates

Proteins with Cognition-Associated Structural Changes in a Rat Model of Aging Exhibit Reduced Refolding Capacity

Protein misfolding involving entanglements provides a structural explanation for the origin of stretched-exponential refolding kinetics

Proteome-Wide Assessment of Protein Structural Perturbations under High Pressure

FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Data Sets Built on FragPipe

Synonymous mutations can alter protein dimerization through localized interface misfolding involving self-entanglements

Lowering Activation Barriers to Success in Physical Chemistry (LABSIP): A Community Project

Secretion‐Catalyzed Assembly of Protein Biomaterials on a Bacterial Membrane Surface

Secretion‐Catalyzed Assembly of Protein Biomaterials on a Bacterial Membrane Surface

Progress toward Proteome-Wide Photo-Cross-Linking to Enable Residue-Level Visualization of Protein Structures and Networks In Vivo

Early Selection of the Amino Acid Alphabet Was Adaptively Shaped by Biophysical Constraints of Foldability

How synonymous mutations alter enzyme structure and function over long timescales

A proteome-wide map of chaperone-assisted protein refolding in a cytosol-like milieu

DomainMapper: Accurate domain structure annotation including those with non‐contiguous topologies

Universal protein misfolding intermediates can bypass the proteostasis network and remain soluble and less functional

Intracellular Formation of a DNA Damage-Induced, Histone Post-Translational Modification Following Bleomycin Treatment

Nucleosome recognition and DNA distortion by the Chd1 remodeler in a nucleotide-free state

Collaborators (9)

Karen Fleming

Grace Stokes

Yang Jiang

Yingzi Xia

Ian Sitarik

Cynthia Wolberger

Robin Krystufek

Margaret Johnson

Piyoosh Sharma

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