Susanne Pedersen
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Chief Technology Officer
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Susanne Pedersen is the Chief Technology Officer at Genetic Signatures in Australia. Her research primarily focuses on the application of DNA methylation techniques in oncology, particularly in the context of lung adenocarcinoma and colorectal cancer. Recent articles by Prof. Pedersen explore the detection of circulating tumor DNA methylated in BCAT1 and IKZF1 as prognostic indicators and tools for predicting cancer recurrence.
Recent Grants
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A liquid biopsy DNA methylation blood test for personalised treatment of patients with gastrointestinal cancers.
Open Date: 2021-01-01
Close Date: 2025-01-01
Grant: Close
Do patients with symptoms need a colonoscopy? A novel panel of non-invasive biomarkers to determine need for diagnostic investigation
Open Date: 2021-01-01
Close Date: 2025-01-01
Grant: Close
Personalising treatment and surveillance for colorectal cancer: prognostication with the circulating tumour-derived methylated DNA markers BCAT1 and IKZF1
Open Date: 2019-06-01
Close Date: 2022-05-31
Grant: Close
FIT for purpose: personalised surveillance colonoscopy for people at increased risk of colorectal cancer.
Open Date: 2019-01-01
Close Date:
Grant: Close
A novel multi-gene marker blood test to increase community participation in colorectal cancer screening.
Open Date: 2016-01-01
Close Date: 2018-12-31
Articles (10)
Background: Colorectal cancer (CRC) has a high rate of recurrence, in particular for advanced disease, but prognosis based on staging and pathology at surgery can have limited efficacy. The presence of circulating tumor DNA (ctDNA) at diagnosis could be used to improve the prediction for disease recurrence. Objectives: To assess the impact of detecting methylated BCAT1/IKZF1 ctDNA at diagnosis in combination with demographic, lifestyle, clinical factors and tumor pathology, to assess predictive value for recurrence. Design: A retrospective cohort study. Methods: The cohort included 180 patients (36 with recurrent CRC), who had undergone complete treatment and surveillance for a minimum of 3 years. Participant clinical details and ctDNA methylated BCAT1/ IKZF1 results were compared between those with and without recurrence, and cox regression analysis assessed each factor on disease-free survival. Results: Clinical factors independently associated with reduced disease-free survival included nodal involvement (HR = 3.83, 95% CI 1.56-9.43, P = .003), M1 stage (HR = 4.41, 95% CI 1.18-16.45, P = .027), a resection margin less than 2 mm (HR = 4.60, 95% CI 1.19-17.76, P = .027), perineural involvement (HR = 2.50, 95% CI 1.01-6.17, P = .047) and distal tumors (HR = 3.13, 95% CI 1.07-9.18, P = .037). Methylated BCAT1/ IKZF1 was detected in 51.7% (93/180) of pre-treatment plasma samples. When a positive ctDNA finding was considered in combination with these clinical prognostic factors, there was improved predictive power of recurrence for patients with perineural involvement (HR = 4.44, 95% CI 1.92-10.26, P < .001), and it marginally improved the predictive factor for M1 stage (HR = 7.59, 95% CI 2.30-25.07, P = .001) and distal tumors (HR = 5.04, 95% CI 1.88-13.49, P = .001). Conclusions: Nodal invasion, metastatic disease, distal tumor site, low resection margins and perineural invasion were associated with disease recurrence. Pre-treatment methylated ctDNA measurement can improve the predictive value for recurrence in a subset of patients, particularly those with perineural involvement. Registration: Australian and New Zealand Clinical Trials Registry #12611000318987.
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2024
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2024
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2023
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2022
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2022
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2022
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2022
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2021
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2020
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2020
Collaborators (5)
Geraldine Laven-Law
Flinders University
Erin L Symonds
Flinders University
Molla Mesele Wassie
Flinders University
Graeme Young
Flinders University
Jean M. Winter
Flinders University
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