Taane Clark

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Professor of Genomics and Global Health

London School of Hygiene & Tropical Medicine

United Kingdom

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Recent Grants

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GenES_VBD network (Genomic Epidemiology tools for the Surveillance of Vector Borne Diseases: applied to tick species, reservoirs, and pathogens

Open Date: 2023-03-31

Close Date: 2026-03-30

Grant: Close

AI assisted genomic profiling for the personalisation of treatment and control of infections

Open Date: 2022-08-31

Close Date: 2023-02-28

Grant: Close

Dietary patterns, microbiome, metabolome and cardiovascular disease risk in transitioning India

Open Date: 2021-04-30

Close Date: 2023-02-28

Grant: Close

Serological tools for COVID-19 control and vaccine roll-out in Southeast Asia

Open Date: 2020-11-12

Close Date: 2023-03-30

Grant: Close

"A genome-wide association study of myalgic encephalomyelitis / chronic fatigue syndrome(ME/CFS)"

Open Date: 2020-08-31

Close Date: 2024-08-30

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Collaborators (6)

Dong Xia

Senior Lecturer in Bioinformatics

Royal Veterinary College

UNITED KINGDOM

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William Stone

Assistant Professor

London School of Hygiene & Tropical Medicine

UNITED KINGDOM

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Wataru Kagaya

Assistant professor

Nagasaki University

JAPAN

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Christophe Noël SOLA

Enseignant Chercheur-PU/Professor of Microbiology, Senior Scientist

Université Paris-Saclay

FRANCE

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Jody Phelan

Assistant Professor

London School of Hygiene & Tropical Medicine

UNITED KINGDOM

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Cyril Gaudin

Institut Pasteur de Lille

FRANCE

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Taane Clark

Research Interests

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Recent Grants

Articles (19)

Exploring the Antimicrobial Resistance Profile of Salmonella typhi and Its Clinical Burden

Exploring optimal drug targets through subtractive proteomics analysis and pangenomic insights for tailored drug design in tuberculosis

Genomic surveillance of Anopheles mosquitoes on the Bijagós Archipelago using custom targeted amplicon sequencing identifies mutations associated with insecticide resistance

Large-scale statistical analysis of Mycobacterium tuberculosis genome sequences identifies compensatory mutations associated with multi-drug resistance

Multi-platform whole genome sequencing for tuberculosis clinical and surveillance applications

New reference genomes to distinguish the sympatric malaria parasites, Plasmodium ovale curtisi and Plasmodium ovale wallikeri

Newly Identified Mycobacterium africanum Lineage 10, Central Africa

Uncovering the genetic diversity in Aedes aegypti insecticide resistance genes through global comparative genomics

Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data.

Feature weighted models to address lineage dependency in drug-resistance prediction from Mycobacterium tuberculosis genome sequences

Comparison of in silico predicted Mycobacterium tuberculosis spoligotypes and lineages from whole genome sequencing data.

Drug resistance profiling of asymptomatic and low-density Plasmodium falciparum malaria infections on Ngodhe island, Kenya, using custom dual-indexing next-generation sequencing.

Genomic and functional portrait of multidrug-resistant, hydrogen sulfide (H<sub>2</sub>S)-producing variants of <i>Escherichia coli</i>.

High throughput human genotyping for variants associated with malarial disease outcomes using custom targeted amplicon sequencing.

Case report: A successfully treated case of community-acquired urinary tract infection due to <i>Klebsiella aerogenes</i> in Bangladesh.

Genome-wide genetic variation and molecular surveillance of drug resistance in Plasmodium falciparum isolates from asymptomatic individuals in Ouélessébougou, Mali.

Bayesian compositional regression with microbiome features via variational inference.

Genome dynamics of high-risk resistant and hypervirulent <i>Klebsiella pneumoniae</i> clones in Dhaka, Bangladesh.

A computational method for predicting the most likely evolutionary trajectories in the stepwise accumulation of resistance mutations

Collaborators (6)

Dong Xia

William Stone

Wataru Kagaya

Christophe Noël SOLA

Jody Phelan

Cyril Gaudin

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