Wataru Shinoda

Professor

Okayama University

Japan

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About

Wataru Shinoda is a Professor at Okayama University in Japan. His research areas include molecular dynamics simulations, protein adsorption, lipid nanoparticles, and membrane biology, as evidenced by his recent articles. He has contributed to the development of computational models for studying the structural properties and interactions of biomolecules, including the SPICA force field for nucleic acids and proteins.

Articles (27)

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2025

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2022

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2022

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2022

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2022

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2022

Collaborators (19)

Prof. dr. Daniela A. Wilson

Prof. Dr.

Radboud Universiteit Nijmegen Institute for Molecules and Materials

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Wataru Shinoda

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About

Articles (27)

Discrepant lithium transference numbers due to heterogeneous speciation

Hydrophobicity-Governed Protein Adsorption on Poly(ω-methoxyalkyl acrylate) Surfaces: A Coarse-Grained Molecular Dynamics Study

SPICA Force Field for Nucleic Acids and Its Application to Lipid Nanoparticles

In Silico Study of Ionizable Lipid Nanoparticles Using the SPICA Force Field

Unraveling the Molecular Mechanism of Transient Multilamellar Formation in Ethanol-Modified Vesicle Solutions

Asymmetry and heterogeneity in the plasma membrane

Fully atomistic molecular dynamics modeling of photoswitchable azo-PC lipid bilayers: structure, mechanical properties, and drug permeation

NMR and molecular simulation studies on the structure elucidation of the amphotericin B ion channel using 13C and 19F labelling

Selective adsorption of unmethylated DNA on ZnO nanowires for separation of methylated DNA

Linear ether-based highly concentrated electrolytes for Li–sulfur batteries

pSPICA Force Field Extended for Proteins and Peptides

Understanding the effects of ethanol on the liposome bilayer structure using microfluidic-based time-resolved small-angle X-ray scattering and molecular dynamics simulations

Lithium-Ion Dynamics in Sulfolane-Based Highly Concentrated Electrolytes

Molecular Dynamics Simulations of High-Concentration Li[TFSA] Sulfone Solution: Effect of Easy Conformation Change of Sulfolane on Fast Diffusion of Li Ion

Li-Ion Transport and Solution Structure in Sulfolane-Based Localized High-Concentration Electrolytes

Complex Energy Landscapes of Self-Assembled Vesicles

Self-Assembly of Glycerol-Amphiphilic Janus Dendrimers Amplifies and Indicates Principles for the Selection of Stereochemistry by Biological Membranes

HER‐2‐Targeted Boron Neutron Capture Therapy with Carborane‐integrated Immunoliposomes Prepared via an Exchanging Reaction

Improved Protein Model in SPICA Force Field

Pragmatic Coarse-Graining of Proteins: Models and Applications

Molecular Level Origin of Ion Dynamics in Highly Concentrated Electrolytes

Mutation detection of urinary cell-free DNA via catch-and-release isolation on nanowires for liquid biopsy

Amphotericin B assembles into seven-molecule ion channels: An NMR and molecular dynamics study

Fluorescence Turn‐on of Tetraphenylethylene Derivative by Transfer from Cyclodextrin to Liposomes, HeLa cells, and E. coli

Cooperative antimicrobial action of melittin on lipid membranes: A coarse-grained molecular dynamics study

SPICA Force Field for Proteins and Peptides

Adsorption characteristics of peptides on ω-functionalized self-assembled monolayers: a molecular dynamics study

Collaborators (19)

Prof. dr. Daniela A. Wilson

Tomoya Yamamoto

Shinya Hanashima

Mayank Dixit

Masayoshi Watanabe

Hari O. S. Yadav

Stefano Vanni

Yuichi Umegawa

Cesar Rodriguez-Emmenegger

michio murata

Atsushi Ikeda

Shusaku Nagano

Adam K. Sieradzan

Sangjae Seo

Michael L. Klein

Kazuma Yasuhara

Steve Nielsen

Hiroshi Tsuchikawa

Yousuke Ooyama

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