Adam K. Sieradzan at University of Gdańsk - Research Interests, Publications & Academic Profile

Adam K. Sieradzan

University of Gdańsk

Poland

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Research Interests

Biochemistry

100%

Polymer Physics

100%

Protein Chemistry

100%

Structural Biology

70%

Molecular Physics

50%

Molecular Dynamics

40%

Membrane Protein

30%

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Articles20

Integrating Explicit and Implicit Fullerene Models into UNRES Force Field for Protein Interaction Studies

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Year:

2024

Multilayered Computational Framework for Designing Peptide Inhibitors of HVEM-LIGHT Interaction

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Year:

2024

Multi-GPU UNRES for scalable coarse-grained simulations of very large protein systems

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Year:

2024

Peptide-based inhibitors targeting the PD-1/PD-L1 axis: potential immunotherapeutics for cancer

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Year:

2024

Multi-GPU-powered UNRES package for physics-based coarse-grained simulations of structure, dynamics, and thermodynamics of protein systems at biological size- and timescales

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Year:

2024

Extension of the SUGRES-1P Coarse-Grained Model of Polysaccharides to Heparin

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Year:

2023

Pragmatic Coarse-Graining of Proteins: Models and Applications

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Year:

2023

Energy landscapes for proteins described by the UNRES coarse-grained potential

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2023

Impact of <scp>AlphaFold</scp> on structure prediction of protein complexes: The <scp>CASP15‐CAPRI</scp> experiment

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2023

Toward Consistent Physics-Based Modeling of Local Backbone Structures and Chirality Change of Proteins in Coarse-Grained Approaches

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2023

Theoretical Investigation of the Coronavirus SARS-CoV-2 (COVID-19) Infection Mechanism and Selectivity

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2022

Theory and Practice of Coarse-Grained Molecular Dynamics of Biologically Important Systems

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Year:

2021

Theoretical investigation of the structural insights of the interactions of γ-Fe2O3 nanoparticle with (EMIM TFSI) ionic liquid

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2021

Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment

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2021

Prediction of CD28-CD86 protein complex structure using different level of resolution approach

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Year:

2021

Investigation of Phosphorylation-Induced Folding of an Intrinsically Disordered Protein by Coarse-Grained Molecular Dynamics

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2021

Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13

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Year:

2020

Fragments of gD Protein as Inhibitors of BTLA/HVEM Complex Formation - Design, Synthesis, and Cellular Studies

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Year:

2020

Disulfide-Linked Peptides for Blocking BTLA/HVEM Binding

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Year:

2020

Structural Characterization of Covalently Stabilized Human Cystatin C Oligomers

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Year:

2020

Collaborators17

Anna Wardowska

Medical University of Gdansk

POLAND

Brian Pierce

University of Maryland

UNITED STATES

Cezary Czaplewski

professor

University of Gdańsk

POLAND

Adam Liwo

Professor

University of Gdańsk

POLAND

Romina Oliva

Associate Professor

Università degli Studi di Napoli Parthenope

ITALY

Wataru Shinoda

Professor

Okayama University

JAPAN

Stefano Vanni

Associate Professor

University of Fribourg

SWITZERLAND

Katarzyna Wegrzyn

University of Gdańsk

POLAND

Peter Steinberger

Medical University of Vienna

AUSTRIA

Sergey A. Samsonov

University of Gdańsk

POLAND

Rafal Slusarz

University of Gdańsk

POLAND

Pawel Krupa

Institute of Physics

POLAND

Adam Lesner

professor

University of Gdańsk

POLAND

Martyna Maszota-Zieleniak

University of Gdańsk

POLAND

Artur Gieldon

assistant professor

University of Gdańsk

POLAND

Aleksandra Bielicka-Gieldon

University of Gdańsk

POLAND

Celina Sikorska

University of Auckland

NEW ZEALAND

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