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Publisher
source

CNRS

Just Landed

Postdoc in Image Analysis for Developmental Neurobiology CNRS in France

Degree Level

Postdoc

Field of study

Computer Science

Funding

Available

Deadline

Dec 3, 2026

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Country

France

University

CNRS

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Keywords

Computer Science
Biomedical Engineering
Information Technology
Biology
Neuropsychology
Self-supervised Learning
Multimodal Imaging
Neurodevelopment
Developmental Neuroscience
Image Registration
ML

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About this position

This postdoctoral position is based in the Microscopies avancées et physiologie des tissus group at the Laboratoire d'Optique et de Biosciences (LOB), École Polytechnique, in Palaiseau, France, within a broader CNRS-linked research environment focused on advanced optical imaging and developmental neurobiology.

The project is centered on large-scale bioimage analysis for 3D multichannel, multicolour mouse brain data exceeding terabyte scale. The successful candidate will work from an existing operational pipeline and develop more powerful automated strategies to extract richer information faster from increasingly diverse imaging datasets.

Two complementary research directions are highlighted: self-supervised learning methods for the joint detection, segmentation, tracking, and classification of cells in very large images, and multiscale registration between images acquired with different contrast modalities. The work involves testing and adapting partial solutions from the literature, especially statistical learning approaches, to complex multicolour data.

The position is embedded in a long-standing collaboration between the LOB advanced microscopy team and the neurogenesis and circuit development group at the Institut de la Vision. The shared imaging technology enables subcellular-resolution 3D mapping of whole mouse brains labeled with a multicolour Brainbow approach that reveals cell lineages. The data generated contain hundreds of billions of voxels, and the postdoctoral researcher will contribute to the computational effort to process, analyze, and understand these datasets, including in collaboration with computer science and AI partners at the University of the Basque Country.

The role is therefore ideal for a researcher interested in high-dimensional microscopy, computational biology, and machine learning applied to developmental brain imaging.

Funding details

Available

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