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A. Ramette

bioinformatics, biostatistics

University of Bern

Switzerland

Research Interests

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Professors in Switzerland Professors in Microbiology Microbiology professors in Switzerland

Articles (21)

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2026

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Collaborators (23)

Guido Beldi

Full Professor

University of Bern

SWITZERLAND

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Michael Huber

Head Diagnostics and Development

University of Zurich

SWITZERLAND

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Stephanie Christine Ganal-Vonarburg

Assistant Professor

University of Bern

SWITZERLAND

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Moritz Bigalke

Full Professor

Technische Universität Darmstadt

GERMANY

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Klaus Schlaeppi

Prof

University of Basel

SWITZERLAND

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Peter Keller

Head of Clinical Bacteriology/ Mycology

University of Basel

SWITZERLAND

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Roger D Kouyos

Associate Professor

University Hospital of Zurich

SWITZERLAND

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Adrien Mestrot

University of Bern

SWITZERLAND

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Katharina Kusejko

University of Zurich

SWITZERLAND

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Judith Bouman

University of Bern

SWITZERLAND

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Olga Endrich

Head of Department

University Hospital of Bern

SWITZERLAND

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Andrea Endimiani

Associated Professor

University of Bern

SWITZERLAND

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Hans H. Hirsch

Professor

UiT The Arctic University of Norway

NORWAY

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Gabriel Deslandes-Hérold

University of Fribourg

SWITZERLAND

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Christian Althaus

University of Bern

SWITZERLAND

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Aurea C. Chiaia-Henández

University of Bern

SWITZERLAND

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Matthias Cavassini

Head of the Infectious Diseases outpatient clinic

Lausanne University Hospital

SWITZERLAND

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Stephen L. Leib

Director / Full Professor / Chair Clinical Microbiology

University of Bern

SWITZERLAND

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Francesca Ronchi

Associate Professor (W2, with tenure track)

Charité - Universitätsmedizin Berlin

GERMANY

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Matthias Erb

Full Professor of Biotic Interactions

University of Bern

SWITZERLAND

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Alexander B. Leichtle

University of Bern

SWITZERLAND

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Karin J. Metzner

University of Zurich

SWITZERLAND

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Bhanu Sinha

Professor

University Medical Center Groningen

NETHERLANDS

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A. Ramette

Research Interests

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Articles (21)

Machine learning-based short-term forecasting of COVID-19 hospital admissions using routine hospital patient data

Soil Indigenous Microbes Protect Maize Plants in Arsenic-Contaminated Soils

Complete genome sequences of three Brucella abortus strains isolated from animals in 1954 in Switzerland

Unveiling the terra cognita of sequence spaces using Cartesian projection of asymmetric distances

Evaluation of Oxford Nanopore Technologies workflows for genomic epidemiology of outbreak-associated bacterial isolates in the clinical setting

Component specific responses of the microbiomes to common chemical stressors in the human food chain

Field evaluation of nanopore targeted next-generation sequencing to predict drug-resistant tuberculosis from native sputum in South Africa and Zambia.

Soil Indigenous Microbes Interact with Maize Plants in High-Arsenic Soils to Limit the Translocation of Inorganic Arsenic Species to Maize Upper Tissues

NASCarD (Nanopore Adaptive Sampling with Carrier DNA): A Rapid, PCR-Free Method for SARS-CoV-2 Whole-Genome Sequencing in Clinical Samples

Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1

The Effects of Soil Microbial Disturbance and Plants on Arsenic Concentrations and Speciation in Soil Water and Soils

Quantifying and Predicting Ongoing Human Immunodeficiency Virus Type 1 Transmission Dynamics in Switzerland Using a Distance-Based Clustering Approach

Fourier-transform infrared spectroscopy for typing of vancomycin-resistant Enterococcus faecium : performance analysis and outbreak investigation

Fourier-transform infrared spectroscopy for typing of vancomycin-resistant Enterococcus faecium: performance analysis and outbreak investigation

Genome Sequences of Rare Human Enterovirus Genotypes Recovered from Clinical Respiratory Samples in Bern, Switzerland

Ongoing toxin-positive diphtheria outbreaks in a federal asylum centre in Switzerland, analysis July to September 2022

Comparative genomics of 26 complete circular genomes of 18 different serotypes of Actinobacillus pleuropneumoniae

External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories

Increasing Frequency and Transmission of HIV-1 Non-B Subtypes Among Men Who Have Sex With Men in the Swiss HIV Cohort Study

Evaluation of whole- genome sequence data analysis approaches for short- and long- read sequencing of Mycobacterium tuberculosis

Repatriation of a patient with COVID-19 contributed to the importation of an emerging carbapenemase producer

Collaborators (23)

Guido Beldi

Michael Huber

Stephanie Christine Ganal-Vonarburg

Moritz Bigalke

Klaus Schlaeppi

Peter Keller

Roger D Kouyos

Adrien Mestrot

Katharina Kusejko

Judith Bouman

Olga Endrich

Andrea Endimiani

Hans H. Hirsch

Gabriel Deslandes-Hérold

Christian Althaus

Aurea C. Chiaia-Henández

Matthias Cavassini

Stephen L. Leib

Francesca Ronchi

Matthias Erb

Alexander B. Leichtle

Karin J. Metzner

Bhanu Sinha

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