Alexander Goesmann

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Full professor

Justus Liebig Universitat Giessen

Germany

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About

Alexander Goesmann is a Full Professor at Justus Liebig Universitat Giessen in Germany. His research primarily focuses on genome annotation, bioinformatics, and the characterization of microbial genomes, as evidenced by his recent publications. He has contributed to advancements in data management and secure data storage, and his work also includes studying the roles of extracellular vesicles in bacterial communication and pathogenesis.

Recent Grants

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Z1: Core Unit Genome signatures and integrated systems biology of pathogen-host interaction and cellular networks in the infected and injured lung

Open Date: 2016-01-01

Close Date:

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Nucleosome preservation in mammalian sperm: an epigenetic program ensuring the healthy male reproduction

Open Date: 2015-01-01

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Genomics of incipient speciation in a highly vagile marine mammal: genome-wide analysis of demographic history, population structure and local adaptation in the endangered Galápagos sea lion

Open Date: 2014-01-01

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GRK 1906: Computational Methods for the Analysis of the Diversity and Dynamics of Genomes

Open Date: 2013-01-01

Close Date:

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Service Project: Bioinformatics analysis of genome-wide binding and expression studies (Z01)

Open Date: 2010-01-01

Close Date:

Articles (16)

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2025

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2025

By investigating wet and dry age-related ripening of beef, Pseudomonas strains V3/3/4/13 T and V3/K/3/5 T were isolated. Strain V3/3/4/13 T exhibited more than 99 % 16S rRNA gene-based similarity to Pseudomonas fragi and other members of this group, while isolate V3/K/3/5 T was very close to Pseudomonas veronii and a number of relatives within the Pseudomonas fluorescens group. Additional comparisons of complete rpoB sequences and draft genomes allowed us to place isolate V3/3/4/13 T close to Pseudomonas deceptionensis DSM 26521 T . In the case of V3/K/3/5 T the closest relative was P. veronii DSM 11331 T . Average nucleotide identity (ANIb) and digital DNA–DNA hybridization (dDDH) values calculated from the draft genomes of V3/3/4/13 T and P. deceptionensis DSM 26521 T were 88.5 and 39.8 %, respectively. For V3/K/3/5 T and its closest relative P. veronii DSM 11331 T , the ANIb value was 95.1 % and the dDDH value was 60.7 %. The DNA G+C contents of V3/3/4/13 T and V3/K/3/5 T were 57.4 and 60.8 mol%, respectively. Predominant fatty acids were C 16 : 0 , C 18 : 1 ω7 c , C 17 : 0 cyclo and summed feature C 16 : 1 ω7 ct /C 15 : 0 iso 2OH. The main respiratory quinones were Q9, with minor proportions of Q8 and, in the case of V3/K/3/5 T , additional Q10. The main polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and, in the case of V3/K/3/5 T , additional phosphatidylcholine. Based on the combined data, isolates V3/3/4/13 T and V3/K/3/5 T should be considered as representatives of two novel Pseudomonas species. The type strain of the newly proposed Pseudomonas kulmbachensis sp. nov. is V3/3/4/13 T (=DSM 113654 T =LMG 32520 T ), a second strain belonging to the same species is FLM 004-28 (=DSM 113604=LMG 32521); the type strain for the newly proposed Pseudomonas paraveronii sp. nov. is V3/K/3/5 T (=DSM 113573 T =LMG 32518 T ) with a second isolate FLM 11 (=DSM 113572=LMG 32519).

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2024

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2024

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2024

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2024

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2023

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2023

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2023

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2023

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2023

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2022

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2021

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2021

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2021

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2021

Collaborators (85)

Simon Coles

University of Southampton

UNITED KINGDOM

Alexander Goesmann

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Recent Grants

Articles (16)

Bakta Web – rapid and standardized genome annotation on scalable infrastructures

Extracellular Vesicles From Xylella fastidiosa Carry sRNAs and Genomic Islands, Suggesting Roles in Recipient Cells

Pseudomonas kulmbachensis sp. nov. and Pseudomonas paraveronii sp. nov., originating from chilled beef and chicken breast

Nucleocapsids of the Rift Valley fever virus ambisense S segment contain an exposed RNA element in the center that overlaps with the intergenic region

Crypt4GH-JS: securely storing sensitive data online with client-side encryption

BakRep – a searchable large-scale web repository for bacterial genomes, characterizations and metadata

NFDI4DS Gateway and Portal

Towards a Research Data Commons in the German National Research Data Infrastructure NFDI: Vision, Governance, Architecture

Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities

Draft Genome Sequence of Sinomicrobium sp. Strain PAP.21, Isolated from a Coast Sample of Papua, Indonesia

Draft Genome Sequences of Algoriphagus sp. Strain PAP.12 and Roseivirga sp. Strain PAP.19, Isolated from Marine Samples from Papua, Indonesia

Evolutionarily stable gene clusters shed light on the common grounds of pathogenicity in the Acinetobacter calcoaceticus-baumannii complex

Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification

Countering reproducibility issues in mathematical models with software engineering techniques: A case study using a one-dimensional mathematical model of the atrioventricular node

mRNA Inventory of Extracellular Vesicles from Ustilago maydis

Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef

Collaborators (85)

Simon Coles

Johanna Wurst

Peter Benner

Ulrich Sax

Dagmar Waltemath

Claudia Engelhardt

Yusra Shakeel

Ulrike Wittig

Michael Diepenbroek

Sebastian Klammt

Venkata Satagopam

Mario F. Feldman

Axel Klinger

Alexander Woll

Julian Reichwald

Till Riedel

Auriol Degbelo

Kerstin Helbig

Christiane Schneide

Oliver Kohlbacher

Iris Pigeot

Bernhard Miller

Felix Bach

Jörn Kalinowski

Lars Bernard

Frank Meineke

Regine Stein

Jeremy Frey

Natalie Kiesler

Zeyd Boukhers

Andreas Witt

Christoph Steinbeck

Martin Erdmann

Stefan Janssen

Ulrike Lucke

Andreas Daniel

Nicole Jung

Dominik Schwarz

Manuela Richter

Roland Bertelmann

Sonja Herres-Pawlis

Stefan Dietze

Uwe Bornscheuer

Jens Dierkes

Sven Griep

Robert H. Schmitt

Moritz Schubotz

Kai Papenfort

Roland Prof. Lachmayer

Dirk von Suchodoletz

Judith Engel

Hannes Lowagie

Ralph Müller-Pfefferkorn

Taras Petrenko

Toralf Kirsten

Ramin Yahyapour