Oliver Kohlbacher
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Articles (12)
Motivation Cross-linking mass spectrometry has made remarkable advancements in the high-throughput characterization of protein structures and interactions. The resulting pairs of cross-linked peptides typically require geometric assessment and validation, given the availability of their corresponding structures. Results CLAUDIO (Cross-linking Analysis Using Distances and Overlaps) is an open-source software tool designed for the automated analysis and validation of different varieties of large-scale cross-linking experiments. Many of the otherwise manual processes for structural validation (i.e. structure retrieval and mapping) are performed fully automatically to simplify and accelerate the data interpretation process. In addition, CLAUDIO has the ability to remap intra-protein links as inter-protein links and discover evidence for homo-multimers. Availability and implementation CLAUDIO is available as open-source software under the MIT license at https://github.com/KohlbacherLab/CLAUDIO.
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2024
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2024
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2023
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2023
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2023
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2022
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2022
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2022
Collaborators (97)
Simon Coles
University of Southampton
Johanna Wurst
Leibniz University Hannover
Peter Benner
Adjunct Professor
Otto-von-Guericke Universität Magdeburg
Ulrich Sax
Univ-Prof. Dr., Head of Translational Research Informatics Research Group
Universitätsmedizin Göttingen
Dagmar Waltemath
Professor of Medical Informatics
Universitätsmedizin Greifswald
Claudia Engelhardt
Technische Universität Dresden
Yusra Shakeel
Karlsruhe Institute of Technology
Ulrike Wittig
-
Michael Diepenbroek
University of Bremen
Sebastian Klammt
Head of ZKS
University Hospital Würzburg
Venkata Satagopam
-
Axel Klinger
Chief Technology Officer (CTO)
Technische Informationsbibliothek (TIB) – Leibniz Information Centre for Science and Technology
Alexander Woll
Karlsruhe Institute of Technology
André Koch
University of Tübingen
Julian Reichwald
Professor for Business Informatics, Digital Transformation and Technology
Hochschule Mannheim
Till Riedel
Karlsruher Institut für Technologie
Auriol Degbelo
University of Münster
Kerstin Helbig
Head of department
Humboldt-Universität zu Berlin
Christiane Schneide
Deutsches Elektronen-Synchrotron DESY
Iris Pigeot
Full professor (W3)
University of Bremen
Bernhard Miller
GESIS - Leibniz-Institut für Sozialwissenschaften
Felix Bach
Head of Department
FIZ Karlsruhe – Leibniz Institute for Information Infrastructure
Lars Bernard
Full Professor Geoinformation Science
Technische Universität Dresden
Frank Meineke
Leipzig University
Regine Stein
Co-Head
-
Jeremy Frey
University of Southampton
Natalie Kiesler
Professor for Teaching and Learning in Higher Education
-
Zeyd Boukhers
Group Head
Fraunhofer Institute for Applied Information Technology
Kyowon Jeong
University of Tübingen
Andreas Witt
Head of the Department
Leibniz-Institut für Deutsche Sprache
Christoph Steinbeck
Professor for Analytical Chemistry, Cheminformatics and Chemometrics
Friedrich Schiller University Jena
Martin Erdmann
Prof. Dr.
RWTH Aachen University
Simon Laban
-
Hadeer Elhabashy
University of Tübingen
Ulrike Lucke
University of Potsdam
Vadim Demichev
Charité - Universitätsmedizin Berlin
Martin Eisenacher
Ruhr-Universität Bochum
Andreas Daniel
Deputy Head of the Research Data Center for Higher Education Research and Science Studies
-
Nicole Jung
Karlsruhe Institute of Technology
Dominik Schwarz
Professor of Theoretical Physics
Bielefeld University
Manuela Richter
University of Mainz
Roland Bertelmann
Head of Helmholtz Open Science Office
-
Sonja Herres-Pawlis
RWTH Aachen University
Stefan Dietze
Full Professor
Heinrich Heine University Düsseldorf
Uwe Bornscheuer
Prof.
University of Greifswald
Marie-France Deguilloux
Lecturer
University of Bordeaux
Nicole Nicklisch
Danube Private University
Jens Dierkes
Deputy head of Innovation and Development
University of Cologne
Robert H. Schmitt
RWTH Aachen University
Juliane S. Walz
University Hospital Tübingen
Moritz Schubotz
Head
FIZ Karlsruhe – Leibniz Institute for Information Infrastructure
Roland Prof. Lachmayer
Leibniz University Hannover
Dirk von Suchodoletz
Head of eScience
University of Freiburg
Judith Engel
University of Bremen
Hannes Lowagie
head
Koninklijke Bibliotheek van België
Ralph Müller-Pfefferkorn
head of department "Distributed and data intensive Computing"
TU Dresden
Taras Petrenko
-
Toralf Kirsten
Full Professor of Medical Data Science
Leipzig University
Ramin Yahyapour
Full Professor
Georg-August-Universität
Dominic Winter
University of Bonn
Jan Goebel
-
Michael Goedicke
Professor
Universität Duisburg-Essen
Ricardo Usbeck
Junior Professor
Universität Hamburg
Allard Oelen
Leibniz University Hannover
Guido Juckeland
Head
Helmholtz-Zentrum Dresden-Rossendorf
Rolf Backofen
Full Professor
-
Raphael Ritz
Head of Data Division
Max-Planck-Gesellschaft
Hannes Röst
Assistant Professor
University of Toronto
Laurenz Rettig
Fritz-Haber-Institut der Max-Planck-Gesellschaft
Rossella Aversa
Karlsruhe Institute of Technology
Frank Oliver Glöckner
University of Bremen
Torsten Schrade
Professor for Digital Humanities
University of Applied Sciences
Juliane Fluck
Professor Information Management
University of Bonn
Vladimir Gorshkov
University of Southern Denmark
Michael Striewe
Universität Duisburg-Essen
Norbert Kockmann
Technische Universität Dortmund
Alexander Goesmann
Full professor
Justus Liebig Universitat Giessen
Burkhard Schmidt
Freie Universität Berlin
Thomas Schörner
Deutsches Elektronen-Synchrotron DESY
Sebastian Böcker
Friedrich Schiller University Jena
Frank Lange
RWTH Aachen University
Carsten Oliver Schmidt
Prof.
Universitätsmedizin Greifswald
Johannes Liermann
Lecturer/Researcher
Johannes Gutenberg Universität Mainz
Atinkut Alamirrew Zeleke
Scientific staff member for research data management
Universitätsmedizin Greifswald
Martin Aeschlimann
-
Nico Pfeifer
Professor
Eberhard Karls Universität Tübingen Mathematisch-Naturwissenschaftliche Fakultät
Sören Auer
Prof.
Leibniz University Hannover
Frank Förster
-
Lukas Käll
KTH Royal Institute of Technology
Thomas Hentrich
Saarland University
Astrid Nieße
Carl von Ossietzky Universität Oldenburg
Katja Keller
Karlsruhe Institute of Technology
Julia Schulze-Hentrich
University professor
Saarland University
Jan Heiland
Juniorprofessor
-
Björn Grüning
University of Freiburg
Sally Chambers
Head of Research Infrastructure Services
British Library
Katharina Rall
University of Tübingen
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