Antton Alberdi

Associate Professor

University of Copenhagen

Denmark

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About

Antton Alberdi is an Associate Professor at the University of Copenhagen, Denmark. His research focuses on the microbiomes' influence on animal health and behavior, as well as their role in ecological dynamics, as demonstrated by his recent publications on rumen microbiota in cattle and feralization effects on cat gut microbiota. Additionally, he explores methodologies for analyzing host-microbiota interactions and the genetic assessment of wildlife microbiomes.

Articles (26)

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Collaborators (21)

Giulio Formenti

Rockefeller University

UNITED STATES

Antton Alberdi

Research Interests

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Articles (26)

Robust, Open‐Source and Automation‐Friendly DNA Extraction Protocol for Hologenomic Research

Functional Insights Into the Effect of Feralisation on the Gut Microbiota of Cats Worldwide

HoloFood Data Portal: holo-omic datasets for analysing host–microbiota interactions in animal production

Contrasting recovery of metagenome‑assembled genomes and derived bacterial communities and functional profiles from lizard fecal and cloacal samples

Hologenomic data generation and analysis in wild vertebrates

Metabolic capabilities of key rumen microbiota drive methane emissions in cattle

The role of microbiomes in animal invasions: a scoping review

Going urban: variation in personality traits of an invasive species along an urbanization gradient

A practical introduction to holo-omics

Seasonal dietary changes relate to gut microbiota composition depending on the host species but do not correlate with gut microbiota diversity in arthropod‐eating lizards

A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

Bat diversity boosts ecosystem services: Evidence from pine processionary moth predation

Positive impact of early-probiotic administration on performance parameters, intestinal health and microbiota populations in broiler chickens

Quantitative Synthesis of Microbe‐Driven Acclimation and Adaptation in Wild Vertebrates

Unravelling animal–microbiota evolution on a chip

Mammals show distinct functional gut microbiome dynamics to identical series of environmental stressors

Impact of microbial genome completeness on metagenomic functional inference

A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data

Recovering High‐Quality Host Genomes from Gut Metagenomic Data through Genotype Imputation

Disentangling host–microbiota complexity through hologenomics

Gut microbiota differences between paired intestinal wall and digesta samples in three small species of fish

The gut microbiome buffers dietary adaptation in Bronze Age domesticated dogs

Broad‐scale patterns of geographic avoidance between species emerge in the absence of fine‐scale mechanisms of coexistence

The role of the gut microbiota in the dietary niche expansion of fishing bats

Diversity and compositional changes in the gut microbiota of wild and captive vertebrates

Collaborators (21)

Giulio Formenti

Laura Jane Graham

Urvish Trivedi

Damiano Preatoni

Sónia Santos

Morten T. Limborg

Heath Blackmon

Jacob Agerbo Rasmussen

Orly Razgour

Ana Margarida Pontes da Silva Augusto Santos

Andone Estonba

Esther Rodríguez-Gallego

Marcus Gilbert

Ostaizka Aizpurua

Amanda Bolt Botnen

Adriano Martinoli

Courtney Hofman

Melanie Parejo

Miriam Guivernau

Luisa dos Santos Bay Nielsen

C. Patrick Doncaster

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