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Jacob Agerbo Rasmussen

Københavns Universitet

Denmark

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Research Interests

Microbiology

80%

Conservation Biology

30%

Gut Microbiota

70%

Bacterial Ecology

40%

Environmental Microbiology

40%

Comparative Biology

30%

Population Genetics

20%

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Articles20

HoloFood Data Portal: holo-omic datasets for analysing host–microbiota interactions in animal production

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Year:

2025

A bacterial and viral genome catalogue from Atlantic salmon highlights diverse gut microbiome compositions at pre- and post-smolt life stages

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Year:

2025

A holo-omics analysis shows how sugar kelp can boost gut health in Atlantic salmon

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Year:

2025

Growth and metabolic performance of house fly and black soldier fly larvae differ across densities and waste-based growth substrates

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Year:

2025

The overlooked biodiversity loss

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Year:

2024

Succession of microbial community composition and secondary metabolism during marine biofilm development

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Year:

2024

Ancient reindeer mitogenomes reveal island-hopping colonisation of the Arctic archipelagos

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Year:

2024

A zebrafish model to elucidate the impact of host genes on the microbiota

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Year:

2024

Intestinal microbial profiles of wild Alaskan rainbow trout (Oncorhynchus mykiss) characterized by 16S rRNA amplicon data

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Year:

2024

Genomic and functional characterization of the Atlantic salmon gut microbiome in relation to nutrition and health

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Year:

2024

Unexpected fishy microbiomes

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Year:

2023

Co-diversification of an intestinal Mycoplasma and its salmonid host

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Year:

2023

Genome-resolving metagenomics reveals wild western capercaillies (Tetrao urogallus) as avian hosts for antibiotic-resistance bacteria and their interactions with the gut-virome community

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Year:

2023

Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla)

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Year:

2023

Microbiome “Inception”: an Intestinal Cestode Shapes a Hierarchy of Microbial Communities Nested within the Host

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Year:

2022

A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

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Year:

2022

A strategic model of a host-microbe-microbe system reveals the importance of a joint host-microbe immune response to combat stress-induced gut dysbiosis

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Year:

2022

Rhizospherebacterial communities differ among traditional maize landraces

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Year:

2022

Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species

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Year:

2022

Integrative analyses of probiotics, pathogenic infections and host immune response highlight the importance of gut microbiota in understanding disease recovery in rainbow trout (Oncorhynchus mykiss)

Article Link

Year:

2022

Collaborators20

David Boertmann

Aarhus University

DENMARK

Asmus Toftkær Muurmann

Aalborg University

DENMARK

Shyam Gopalakrishnan

Københavns Universitet

DENMARK

Sabina Leanti La Rosa

Associate Professor in Microbiology

Norwegian University of Life Sciences

NORWAY

Glenn Yannic

Associate Professor

Université Savoie Mont-Blanc

FRANCE

Antton Alberdi

Associate Professor

University of Copenhagen

DENMARK

Louise von Gersdorff Jørgensen

Københavns Universitet

DENMARK

Naia Morueta-Holme

Københavns Universitet

DENMARK

Nolwenn Marie Dheilly

Head of the Pathogen Discovery laboratory

Institut Pasteur

FRANCE

Morten T. Limborg

Københavns Universitet

DENMARK

Xin Sun

Københavns Universitet

DENMARK

Anders Miki Bojesen

Professor

University of Copenhagen

DENMARK

Lone Gram

Technical University of Denmark

DENMARK

Simon Bahrndorff

Aalborg University

DENMARK

Snæbjörn Pálsson

ICELAND

Marcus Gilbert

Københavns Universitet

DENMARK

Michael Martin

Associate Professor

Norwegian University of Science and Technology (NTNU)

NORWAY

Scott Jarmusch

Technical University of Denmark

DENMARK

Ruairidh James Hay Sawers

Assistant Professor

Pennsylvania State University

UNITED STATES

Christopher Barnes

Aarhus University

DENMARK

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