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Joseph Nesme

Københavns Universitet

Denmark

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Research Interests

Microbiology

100%

Environmental Chemistry

40%

Environmental Microbiology

90%

Plant-microbe Interaction

40%

Gut Microbiota

40%

Bacterial Ecology

40%

Biofilm Formation

30%

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Recent Grants

Grant: Close

Catch me if you conjugate! Plasmid recovery from complex ecosystems using secreted pilus machinery as a hook

Open Date: 2020-01-01

Close Date: 2022-12-01

Articles23

Birmingham-group IncP-1α plasmids revisited: RP4, RP1 and RK2 are identical and their remnants can be detected in environmental isolates

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Year:

2025

A chromosome phased diploid genome assembly of African hunting dog (<i>Lycaon pictus</i>)

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Year:

2025

Unfolding the collective functional potential of a synergistic multispecies community through genotypic and phenotypic analyses

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Year:

2025

Enzymatic exposure impacts microbial diversity and reduces biovolume of reverse osmosis membrane-associated biofilms

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Year:

2025

Insights into the ecology of the infant gut plasmidome

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Year:

2024

Single-cell RNA sequencing reveals plasmid constrains bacterial population heterogeneity and identifies a non-conjugating subpopulation

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Year:

2024

Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

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Year:

2024

Characterization and Abundance of Plasmid-Dependent Alphatectivirus Bacteriophages

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Year:

2024

Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition

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Year:

2024

Deciphering the Key Players of the Bacterial Microbiota Associated with Aerial Crown Gall Tumors on Rhododendron

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Year:

2024

Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater

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Year:

2024

Insights into the circular

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Year:

2024

Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning

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Year:

2023

Draft genomes of seven isolates from Danish wastewater facilities belonging to Pseudomonas, Bacillus, Pseudochrobactrum, Brevundimonas, and Pandoraea

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Year:

2023

Influence of sewage sludge stabilization method on microbial community and the abundance of antibiotic resistance genes

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Year:

2022

Long-Term Fertilization Strategy Impacts Rhizoctonia solani–Microbe Interactions in Soil and Rhizosphere and Defense Responses in Lettuce

Article Link

Year:

2022

CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

Article Link

Year:

2022

Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes?

Article Link

Year:

2022

A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media

Article Link

Year:

2022

Biofilm cultivation facilitates coexistence and adaptive evolution in an industrial bacterial community

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Year:

2022

Deciphering bacteria associated with a pre-parasitic stage of the root-knot nematode Meloidogyne hapla in nemato-suppressive and nemato-conducive soils

Article Link

Year:

2022

Exudates from Miscanthus x giganteus change the response of a root-associated Pseudomonas putida strain towards heavy metals

Article Link

Year:

2022

Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils

Article Link

Year:

2022

Collaborators27

Jakob Stokholm

Københavns Universitet

DENMARK

Sergei Kliver

University of Copenhagen

DENMARK

Rita Grosch

Head of Department

Leibniz Institute of Vegetable and Ornamental Crops (IGZ)

GERMANY

Vaughn Cooper

Professor

University of Pittsburgh

UNITED STATES

Heiko T. Kiesewalter

Københavns Universitet

DENMARK

Urvish Trivedi

Københavns Universitet

DENMARK

Lone Brøndsted

Københavns Universitet

DENMARK

Lars Hestbjerg Hansen

Københavns Universitet

DENMARK

Benjamin Heyde

Ruhr-Universität Bochum

GERMANY

Manuel Banzhaf

University of Birmingham

UNITED KINGDOM

Morten Arendt Rasmussen

Københavns Universitet

DENMARK

Mette Vestergård

Aarhus University

DENMARK

Nan Yang

Københavns Universitet

DENMARK

Arnaud Dechesne

Technical University of Denmark

DENMARK

Mads Frederik Hansen

Københavns Universitet

DENMARK

Søren Sørensen

Københavns Universitet

DENMARK

Valentine Cyriaque

Københavns Universitet

DENMARK

Danesh Moradigaravand

Lecturer in Bioinformatics

University of Birmingham

UNITED KINGDOM

Kevin Foster

University of Oxford

UNITED KINGDOM

Veronika Theresa Lutz

University of Copenhagen

DENMARK

Peter Fineran

Professor

University of Otago

NEW ZEALAND

Morten Kam Dahl Dueholm

Aalborg University

DENMARK

Jan-Ulrich Kreft

University of Birmingham

UNITED KINGDOM

Jonas Stenløkke Madsen

Københavns Universitet

DENMARK

Mette Burmølle

Associate Professor

University of Copenhagen

DENMARK

Peter Schröder

Prof. / Senior Plant Physiologist

Technical University of Munich

GERMANY

Witold Kot

Københavns Universitet

DENMARK

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