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Scott Cain
Associate Research Professor
Research Interests
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Articles (7)
The lack of interoperable data standards among reference genome data-sharing platforms inhibits cross-platform analysis while increasing the risk of data provenance loss. Here, we describe the FAIR bioHeaders Reference genome (FHR), a metadata standard guided by the principles of Findability, Accessibility, Interoperability and Reuse (FAIR) in addition to the principles of Transparency, Responsibility, User focus, Sustainability and Technology. The objective of FHR is to provide an extensive set of data serialisation methods and minimum data field requirements while still maintaining extensibility, flexibility and expressivity in an increasingly decentralised genomic data ecosystem. The effort needed to implement FHR is low; FHR’s design philosophy ensures easy implementation while retaining the benefits gained from recording both machine and human-readable provenance.
Year:
2024
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2024
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2024
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2024
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2024
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2023
Year:
2023
Collaborators (8)
Mélanie Courtot
Assistant professor
University of Toronto
Malcolm Fisher
Xenbase Curator (Staff Scientist)
Cincinnati Children's Hospital Medical Center
Cynthia Smith
Research Scientist
Jackson Laboratory
Lincoln Stein
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Jonathan Jacobs
Research Professor
Syracuse University
Kevin Howe
Head of Analysis Ready Data
Wellcome Sanger Institute
David C Molik
-
Stephen Richards
Assistant Professor
Baylor College of Medicine
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