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Virginie Uhlmann

Assistant Professor

University of Zurich

Switzerland

Research Interests

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Professors in Switzerland Professors in Cell Biology Cell Biology professors in Switzerland

Articles (20)

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2026

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2025

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2025

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2025

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2025

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2023

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2023

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2023

Collaborators (21)

Dimitri Kromm

Delft University of Technology

NETHERLANDS

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Elnaz Fazeli

University of Helsinki

FINLAND

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Fernanda Ricci

Head of Advanced Cellular Assays

Stam (Italy)

ITALY

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Teresa Zulueta-Coarasa

European Bioinformatics Institute

UNITED KINGDOM

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Siân Culley

King’s College London

UNITED KINGDOM

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Julia Fernandez-Rodriguez

Head of Centre for Cellular Imaging

University of Gothenburg

SWEDEN

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Yannick Schwab

Team leader in Cell Biology and Biophysics Unit / Head of the Electron Microscopy Core Facility

European Molecular Biology Laboratory

GERMANY

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Peter Bankhead

Reader

University of Edinburgh

UNITED KINGDOM

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Stefania Marcotti

The Francis Crick Institute

UNITED KINGDOM

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Jason Swedlow

Professor of Quantitative Cell Biology

University of Dundee

UNITED KINGDOM

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Martin Hemberg

Brigham and Women's Hospital

UNITED STATES

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Sylvia Emmanuelle Le Dévédec

Associate professor

Leiden University

NETHERLANDS

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Caterina Strambio De Castillia

Primary interest: Development of community software solutions for automated dynamic event classification, error tracking and data provenance capture to improve reproducibility during the computerized analysis and management of big-biomedical imaging data. Secondary interests: 1) Real time visualization of the dynamics of entering HIV-1 viral particles in target human cells. 2) LS-MS based quantitative proteomics investigations of protein expression during anti-viral response mechanisms

University of Massachusetts Chan Medical School

UNITED STATES

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Andre Brown

Imperial College London

UNITED KINGDOM

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Beth Cimini

Associate Director, Bioimage Analysis

Broad Institute

UNITED STATES

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Shani Perera

Wellcome Sanger Institute

UNITED KINGDOM

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Sebastian Dunst

Federal Institute for Risk Assessment

GERMANY

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Arrate Muñoz-Barrutia

Universidad Carlos III de Madrid

SPAIN

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Amber Smith

Associate Professor

University of Tennessee Health Science Center

UNITED STATES

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Helena Jambor

Associate Professor

FH Graubünden

SWITZERLAND

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Davide Danovi

King’s College London

UNITED KINGDOM

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Virginie Uhlmann

Research Interests

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Articles (20)

Bridging annotated microscopy imaging data and analysis method development for scientific discovery

A neural network model enables worm tracking in challenging conditions and increases signal-to-noise ratio in phenotypic screens

Bridging imaging-based in vitro methods from biomedical research to regulatory toxicology

MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis

bia-binder: a web-native cloud compute service for the bioimage analysis community

A nanopathology pipeline for clinical research across scales using human tissue

Integrated histopathology, spatial and single cell transcriptomics resolve cellular drivers of early and late alveolar damage in COVID-19.

A comparison of data-driven shape quantification methods for 2D microscopy images

An improved neural network model enables worm tracking in challenging conditions and increases signal-to-noise ratio in phenotypic screens

From images to understanding: Advances in deep learning for cellular dynamics analysis

The crucial role of bioimage analysts in scientific research and publication

A spatial human thymus cell atlas mapped to a continuous tissue axis

Made to measure: An introduction to quantifying microscopy data in the life sciences

BioModels’ Model of the Year 2023

Temporal variability and cell mechanics control robustness in mammalian embryogenesis.

Label-free phenotyping of human microvessel networks

Making the most of bioimaging data through interdisciplinary interactions

A biologist's guide to planning and performing quantitative bioimaging experiments.

Embryo‐uterine interaction coordinates mouse embryogenesis during implantation

MorphoFeatures for unsupervised exploration of cell types, tissues, and organs in volume electron microscopy

Collaborators (21)

Dimitri Kromm

Elnaz Fazeli

Fernanda Ricci

Teresa Zulueta-Coarasa

Siân Culley

Julia Fernandez-Rodriguez

Yannick Schwab

Peter Bankhead

Stefania Marcotti

Jason Swedlow

Martin Hemberg

Sylvia Emmanuelle Le Dévédec

Caterina Strambio De Castillia

Andre Brown

Beth Cimini

Shani Perera

Sebastian Dunst

Arrate Muñoz-Barrutia

Amber Smith

Helena Jambor

Davide Danovi

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