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Peter Bankhead

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University of Edinburgh

United Kingdom

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QuPath: Advanced open platform for next generation bioimage analysis

Open Date: 2021-11-01

Close Date: 2026-10-31

Articles (18)

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Collaborators (29)

Kevin Cho

Washington University in St. Louis

UNITED STATES

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Virginie Uhlmann

Assistant Professor

University of Zurich

SWITZERLAND

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Teresa Zulueta-Coarasa

European Bioinformatics Institute

UNITED KINGDOM

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Garry Nolan

Professor and Carlota A. Harris Professor

Stanford University School of Medicine

UNITED STATES

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Gregory J. Baker

Assistant Professor

Knight Cancer Institute, Oregon Health and Science University

UNITED STATES

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Peter J. Wild

Director of the Institute, Full Professor of Pathology

University Hospital Frankfurt

GERMANY

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C Simon Herrington

Professor

University of Edinburgh

UNITED KINGDOM

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Andrew Filby

Deputy Dean

Newcastle University

UNITED KINGDOM

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Catharien Hilkens

Prof at Newcastle University

Newcastle University

UNITED KINGDOM

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Sanna Palosaari

University of Oulu

FINLAND

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Christophe Biscio

Associate Professor at Aalborg University

Aalborg University

DENMARK

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Markus Daniel Herrmann

Assistant Professor

Harvard Medical School

UNITED STATES

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Juan Carlos Acosta

Research Professor, CSIC

Instituto de Biomedicina y Biotecnología de Cantabria

SPAIN

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Kai Tan

Professor

University of Pennsylvania

UNITED STATES

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Mark Arends

Professor of Pathology, Head of Division

University of Edinburgh

UNITED KINGDOM

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Joel Saltz

SUNY Distinguished Professor, Chair

Stony Brook University

UNITED STATES

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Michael Angelo

Stanford University School of Medicine

UNITED STATES

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Nischalan Pillay

Professor

University College London

UNITED KINGDOM

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Samouil Farhi

Broad Institute

UNITED STATES

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Daniel Abravanel

Dana-Farber Cancer Institute

UNITED STATES

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Paul Rees

Professor

Swansea University College of Engineering

UNITED KINGDOM

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Warren Kibbe

Professor

Duke University

UNITED STATES

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Philip Coates

Masaryk Memorial Cancer Institute

CZECH REPUBLIC

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Arrate Muñoz-Barrutia

Universidad Carlos III de Madrid

SPAIN

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Andrew Fisher

Professor of Respiratory Medicine

Newcastle University

UNITED KINGDOM

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Helena Jambor

Associate Professor

FH Graubünden

SWITZERLAND

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Ross Porter

University of Edinburgh

UNITED KINGDOM

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Damir Sudar

Chief Science Officer

UNITED STATES

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Jeremy Muhlich

Massachusetts Institute of Technology

UNITED STATES

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Peter Bankhead

Research Interests

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Recent Grants

Articles (18)

CLEAR-IT, a framework for contrastive learning to capture the immune composition of tumor microenvironments

MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis

QuPath Edu and OpenMicroanatomy: Open‐source virtual microscopy tools for medical education

GelGenie: an AI-powered framework for gel electrophoresis image analysis

Liver-Quant: Feature-based image analysis toolkit for automatic quantification of metabolic dysfunction-associated steatotic liver disease

Open and reusable deep learning for pathology with WSInfer and QuPath

A biologist's guide to planning and performing quantitative bioimaging experiments.

QuPath Algorithm Accurately Identifies MLH1-Deficient Inflammatory Bowel Disease-Associated Colorectal Cancers in a Tissue Microarray

AimSeg: A machine-learning-aided tool for axon, inner tongue and myelin segmentation

OPTIMAL: An OPTimized Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration.

MITI minimum information guidelines for highly multiplexed tissue images.

MYC sensitises cells to apoptosis by driving energetic demand.

Developing image analysis methods for digital pathology

Recent Advances in Pathology: the 2022 Annual Review Issue of The Journal of Pathology

Single-cell proteomics defines the cellular heterogeneity of localized prostate cancer.

Development of a semi-automated method for tumour budding assessment in colorectal cancer and comparison with manual methods.

Developing open-source software for bioimage analysis: opportunities and challenges

Using the R Package Spatstat to Assess Inhibitory Effects of Microregional Hypoxia on the Infiltration of Cancers of the Head and Neck Region by Cytotoxic T Lymphocytes

Collaborators (29)

Kevin Cho

Virginie Uhlmann

Teresa Zulueta-Coarasa

Garry Nolan

Gregory J. Baker

Peter J. Wild

C Simon Herrington

Andrew Filby

Catharien Hilkens

Sanna Palosaari

Christophe Biscio

Markus Daniel Herrmann

Juan Carlos Acosta

Kai Tan

Mark Arends

Joel Saltz

Michael Angelo

Nischalan Pillay

Samouil Farhi

Daniel Abravanel

Paul Rees

Warren Kibbe

Philip Coates

Arrate Muñoz-Barrutia

Andrew Fisher

Helena Jambor

Ross Porter

Damir Sudar

Jeremy Muhlich

Make your next move.