Wonyong Kim

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Sunchon National University
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South Korea

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Recent Grants

Grant: Open

Fungal cell factory engineering for production of value-added natural products derived from unculturable microorganisms using agricultural wastes

Open Date: 2022-03-01

Close Date: 2027-02-01

Grant: Close

Genome-wide profiling of RNA N6-methyladenosine methylation and its role during sexual development in filamentous fungi

Open Date: 2019-06-01

Close Date: 2022-05-01

Grant: Close

Collaborative Research: Evolution of Systems Biology Underlying Fruiting Body Development in Fungi

Open Date: 2015-05-15

Close Date: 2018-04-30

Articles (20)

Phylogenetic and functional analyses of <i>N</i> <sup>6</sup> -methyladenosine RNA methylation factors in the wheat scab fungus <i>Fusarium graminearum</i>

In eukaryotes, N 6 -methyladenosine (m 6 A) RNA modification plays a crucial role in governing the fate of RNA molecules and has been linked to various developmental processes. However, the phyletic distribution and functions of genetic factors responsible for m 6 A modification remain largely unexplored in fungi. To get insights into the evolution of m 6 A machineries, we reconstructed global phylogenies of potential m 6 A writers, readers, and erasers in fungi. Substantial copy number variations were observed, ranging from up to five m 6 A writers in early-diverging fungi to a single copy in the subphylum Pezizomycotina, which primarily comprises filamentous fungi. To characterize m 6 A factors in a phytopathogenic fungus Fusarium graminearum , we generated knockout mutants lacking potential m 6 A factors including the sole m 6 A writer MTA1 . However, the resulting knockouts did not exhibit any noticeable phenotypic changes during vegetative and sexual growth stages. As obtaining a homozygous knockout lacking MTA1 was likely hindered by its essential role, we generated MTA1 -overexpressing strains ( MTA1 -OE). The MTA1 -OE5 strain showed delayed conidial germination and reduced hyphal branching, suggesting its involvement during vegetative growth. Consistent with these findings, the expression levels of MTA1 and a potential m 6 A reader YTH1 were dramatically induced in germinating conidia, followed by the expression of potential m 6 A erasers at later vegetative stages. Several genes including transcription factors, transporters, and various enzymes were found to be significantly upregulated and downregulated in the MTA1 -OE5 strain. Overall, our study highlights the functional importance of the m 6 A methylation during conidial germination in F. graminearum and provides a foundation for future investigations into m 6 A modification sites in filamentous fungi. IMPORTANCE N 6 -methyladenosine (m 6 A) RNA methylation is a reversible posttranscriptional modification that regulates RNA function and plays a crucial role in diverse developmental processes. This study addresses the knowledge gap regarding phyletic distribution and functions of m 6 A factors in fungi. The identification of copy number variations among fungal groups enriches our knowledge regarding the evolution of m 6 A machinery in fungi. Functional characterization of m 6 A factors in a phytopathogenic filame

Year:

2024

Collaborators (27)

Christian Zimmermann

TU Wien

AUSTRIA

Martin Steinegger

Assistant Professor

Seoul National University

SOUTH KOREA

Thomas Tørring

Aarhus University

DENMARK

Shravan Dommaraju

Vanderbilt University

UNITED STATES

Dongsoo Yang

Assistant Professor

Korea University

SOUTH KOREA

Francisco Barona Gómez

Associate professor

Universiteit Leiden Instituut Biologie Leiden

NETHERLANDS

Katherine R. Duncan

University Of Strathclyde

UNITED KINGDOM

Claudio Greco

Senior Lecturer

Swansea University

UNITED KINGDOM

Nicole Avalon

Assistant Professor

University at Buffalo School of Pharmacy and Pharmaceutical Sciences

UNITED STATES

Seung-Yoon Oh

Assistant Professor

Changwon National University

SOUTH KOREA

Kyo Bin Kang

Assistant Professor

Sookmyung Women's University

SOUTH KOREA

Eva C. Sonnenschein

Technical University of Denmark

DENMARK

Adriano Rutz

ETH Zürich

SWITZERLAND

Kai Blin

Technical University of Denmark

DENMARK

Chang-Young Jang

Professor

Sookmyung Women's University

SOUTH KOREA

Kristina Haslinger

Assistant Professor

Rijksuniversiteit Groningen

NETHERLANDS

Jaclyn Winter

Associate Professor

University of Utah

UNITED STATES

Nicolau Sbaraini

University in Western Australia

AUSTRALIA

Tilmann Weber

Technical University of Denmark

DENMARK

Jeffrey Townsend

Elihu Professor of Biostatistics

Yale School of Public Health

UNITED STATES

Robert Kalkreuter

Assistant Professor

Florida State University

UNITED STATES

Darren Holland

Griffith University

AUSTRALIA

Eric J. N. Helfrich

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GERMANY

Mitja Maximilian Zdouc

Wageningen University & Research

NETHERLANDS

Yohei Katsuyama

associate professor

The Univeristy of Tokyo

JAPAN

Nika Sokolova

University of Groningen

NETHERLANDS

Katherine Williams

University of Bristol

UNITED KINGDOM
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