Wonyong Kim
Has grant
Research Interests
Explore related searches
Contact this professor
Recent Grants
Grant: Open
Fungal cell factory engineering for production of value-added natural products derived from unculturable microorganisms using agricultural wastes
Open Date: 2022-03-01
Close Date: 2027-02-01
Grant: Close
Genome-wide profiling of RNA N6-methyladenosine methylation and its role during sexual development in filamentous fungi
Open Date: 2019-06-01
Close Date: 2022-05-01
Grant: Close
Collaborative Research: Evolution of Systems Biology Underlying Fruiting Body Development in Fungi
Open Date: 2015-05-15
Close Date: 2018-04-30
Articles (20)
Phylogenetic and functional analyses of <i>N</i> <sup>6</sup> -methyladenosine RNA methylation factors in the wheat scab fungus <i>Fusarium graminearum</i>
In eukaryotes, N 6 -methyladenosine (m 6 A) RNA modification plays a crucial role in governing the fate of RNA molecules and has been linked to various developmental processes. However, the phyletic distribution and functions of genetic factors responsible for m 6 A modification remain largely unexplored in fungi. To get insights into the evolution of m 6 A machineries, we reconstructed global phylogenies of potential m 6 A writers, readers, and erasers in fungi. Substantial copy number variations were observed, ranging from up to five m 6 A writers in early-diverging fungi to a single copy in the subphylum Pezizomycotina, which primarily comprises filamentous fungi. To characterize m 6 A factors in a phytopathogenic fungus Fusarium graminearum , we generated knockout mutants lacking potential m 6 A factors including the sole m 6 A writer MTA1 . However, the resulting knockouts did not exhibit any noticeable phenotypic changes during vegetative and sexual growth stages. As obtaining a homozygous knockout lacking MTA1 was likely hindered by its essential role, we generated MTA1 -overexpressing strains ( MTA1 -OE). The MTA1 -OE5 strain showed delayed conidial germination and reduced hyphal branching, suggesting its involvement during vegetative growth. Consistent with these findings, the expression levels of MTA1 and a potential m 6 A reader YTH1 were dramatically induced in germinating conidia, followed by the expression of potential m 6 A erasers at later vegetative stages. Several genes including transcription factors, transporters, and various enzymes were found to be significantly upregulated and downregulated in the MTA1 -OE5 strain. Overall, our study highlights the functional importance of the m 6 A methylation during conidial germination in F. graminearum and provides a foundation for future investigations into m 6 A modification sites in filamentous fungi. IMPORTANCE N 6 -methyladenosine (m 6 A) RNA methylation is a reversible posttranscriptional modification that regulates RNA function and plays a crucial role in diverse developmental processes. This study addresses the knowledge gap regarding phyletic distribution and functions of m 6 A factors in fungi. The identification of copy number variations among fungal groups enriches our knowledge regarding the evolution of m 6 A machinery in fungi. Functional characterization of m 6 A factors in a phytopathogenic filame
Year:
2024
Collaborators (27)
Christian Zimmermann
TU Wien
Martin Steinegger
Assistant Professor
Seoul National University
Thomas Tørring
Aarhus University
Shravan Dommaraju
Vanderbilt University
Dongsoo Yang
Assistant Professor
Korea University
Francisco Barona Gómez
Associate professor
Universiteit Leiden Instituut Biologie Leiden
Katherine R. Duncan
University Of Strathclyde
Claudio Greco
Senior Lecturer
Swansea University
Nicole Avalon
Assistant Professor
University at Buffalo School of Pharmacy and Pharmaceutical Sciences
Seung-Yoon Oh
Assistant Professor
Changwon National University
Kyo Bin Kang
Assistant Professor
Sookmyung Women's University
Eva C. Sonnenschein
Technical University of Denmark
Adriano Rutz
ETH Zürich
Kai Blin
Technical University of Denmark
Chang-Young Jang
Professor
Sookmyung Women's University
Kristina Haslinger
Assistant Professor
Rijksuniversiteit Groningen
Jaclyn Winter
Associate Professor
University of Utah
Nicolau Sbaraini
University in Western Australia
Tilmann Weber
Technical University of Denmark
Jeffrey Townsend
Elihu Professor of Biostatistics
Yale School of Public Health
Robert Kalkreuter
Assistant Professor
Florida State University
Darren Holland
Griffith University
Eric J. N. Helfrich
-
Mitja Maximilian Zdouc
Wageningen University & Research
Yohei Katsuyama
associate professor
The Univeristy of Tokyo
Nika Sokolova
University of Groningen
Katherine Williams
University of Bristol

How do I reach out?
Sign in for free to see their profile details and contact information.