Publisher
source

ETH Zürich

Doctoral Position in Groundwater Microbial and Viral Ecology and Environmental Bioinformatics ETH Zürich in Switzerland

Degree Level

PhD

Field of study

Computer Science

Funding

Fully funded 48-month doctoral position at ETH Zürich. The position includes employment benefits such as public transport season tickets, car sharing, sports facilities through ASVZ, childcare, and attractive pension benefits.

Deadline

Nov 30, 2026

Country flag

Country

Switzerland

University

ETH Zürich

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Keywords

Computer Science
Chemistry
Environmental Science
Biology
Hydrogeology
Earth Science
Carbon Cycling
Microbiome Research
Environmental Microbiology
Statistics
Bioinformatic

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About this position

Doctoral Position in Groundwater Microbial and Viral Ecology and Environmental Bioinformatics at ETH Zürich

The Geomitigation of Greenhouse Gases group at ETH Zürich is recruiting a highly motivated doctoral candidate to join a newly funded SNSF interdisciplinary project. The project examines how microbial and viral communities shape carbon cycling in groundwater systems, combining environmental microbiology, microbial ecology, viral ecology, environmental genomics, hydrogeochemistry, and bioinformatics.

The successful candidate will investigate microbial and viral diversity, metabolic activity, and evolutionary adaptation across groundwater age gradients. The work involves analysis of metagenomic, metatranscriptomic, and viral sequencing datasets, integration with hydrogeochemical measurements, and laboratory work including DNA and RNA extractions as well as supporting measurements of cell abundance and activity. This is an excellent opportunity for someone interested in subsurface biogeochemistry, environmental bioinformatics, and multi-omics approaches.

Applicants should hold an MSc in microbiology, microbial ecology, bioinformatics, computational biology, geobiology, or a closely related field. Strong experience with metagenomic analysis, Linux/Unix command line use, and programming in Python, R, or Bash is expected. A solid understanding of microbial ecology, physiology, or metabolism is important. Experience with genome-resolved metagenomics, metatranscriptomics, comparative genomics, HPC, or environmental DNA/RNA extraction is advantageous. Excellent English communication skills and the ability to work both independently and collaboratively are required.

The position is fully funded for 48 months and is based at ETH Zürich in Switzerland. The application deadline is 30 November 2026, and the expected start date is 1 March 2027. Applicants must apply via ETH’s online portal and submit a cover letter, CV, transcripts, a digital copy of the master diploma, and contact details for two academic references.

Funding details

Fully funded 48-month doctoral position at ETH Zürich. The position includes employment benefits such as public transport season tickets, car sharing, sports facilities through ASVZ, childcare, and attractive pension benefits.

What's required

Applicants should have an MSc degree in microbiology, microbial ecology, bioinformatics, computational biology, geobiology, or a closely related discipline. Required experience includes metagenomic data analysis or similar environmental bioinformatics approaches, Linux/Unix command-line work, familiarity with computational biology workflows, and at least one programming or scripting language such as Python, R, or Bash. Candidates should have a strong understanding of microbial ecology, physiology, and/or metabolism, excellent analytical and problem-solving skills, creativity, curiosity, motivation, the ability to work independently and in a collaborative interdisciplinary team, and excellent spoken and written English. Experience with genome-resolved metagenomics, metatranscriptomics, comparative genomics, high-performance computing, and DNA/RNA extraction from environmental samples is advantageous, and a background in groundwater microbiology, environmental geochemistry, or biogeochemical cycling is beneficial but not required.

How to apply

Apply online through ETH Zürich’s application portal only. Prepare a cover letter (max. 2 pages), CV (max. 2 pages), Bachelor’s and Master’s transcripts, a digital copy of your Master diploma, and contact details for two academic references. Do not apply by email or post.

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