Alexandre M.J.J. Bonvin

Utrecht University

Netherlands

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Articles (20)

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2025

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2022

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2021

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2021

Collaborators (16)

Giuliano Malloci

University of Cagliari

ITALY

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Bo Hjorth Bentzen

Københavns Universitet

DENMARK

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Brian Pierce

University of Maryland

UNITED STATES

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Irina Moreira

Assistant professor

University of Coimbra

PORTUGAL

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Nanna MacAulay

Professor

University of Copenhagen

DENMARK

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Romina Oliva

Associate Professor

Università degli Studi di Napoli Parthenope

ITALY

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Masakazu Sekijima

JAPAN

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Li Xue

Assistant Professor

Radboudumc

NETHERLANDS

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Rafal Slusarz

University of Gdańsk

POLAND

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Birthe Kragelund

Professor

University of Copenhagen

DENMARK

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Adam K. Sieradzan

University of Gdańsk

POLAND

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ANNA RANAUDO

University of Milano-Bicocca

ITALY

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Cunliang Geng

Netherlands eScience Center

NETHERLANDS

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Trond Ulven

Københavns Universitet

DENMARK

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Guillaume Brysbaert

CNRS

FRANCE

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Paul Bates

Head of Biomolecular Modelling Laboratory

The Francis Crick Institute

UNITED KINGDOM

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Alexandre M.J.J. Bonvin

Research Interests

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Articles (20)

The SH Protein of Mumps Virus is a Druggable Pentameric Viroporin

Biomolecular Interaction Prediction in the Pre‐ and Post‐AlphaFold Era: The 8th CAPRI Evaluation

Toward the Prediction of Binding Events in Very Flexible, Allosteric, Multidomain Proteins

Modeling Protein–Glycan Interactions with HADDOCK

Improved prediction of antibody and their complexes with clustered generative modelling ensembles

Towards the accurate modelling of antibody−antigen complexes from sequence using machine learning and information-driven docking

ARCTIC-3D: automatic retrieval and clustering of interfaces in complexes from 3D structural information

Accelerating protein–protein interaction screens with reduced AlphaFold-Multimer sampling

DeepRank-GNN-esm: a graph neural network for scoring protein–protein models using protein language model

Improving the quality of co‐evolution intermolecular contact prediction with DisVis

MetaScore: A Novel Machine-Learning-Based Approach to Improve Traditional Scoring Functions for Scoring Protein–Protein Docking Conformations

DeepRank-GNN: a graph neural network framework to learn patterns in protein–protein interfaces

Impact of <scp>AlphaFold</scp> on structure prediction of protein complexes: The <scp>CASP15‐CAPRI</scp> experiment

Using machine‐learning‐driven approaches to boost hot‐spot's knowledge

Cyclization and Docking Protocol for Cyclic Peptide–Protein Modeling Using HADDOCK2.4

Interface refinement of low- to medium-resolution Cryo-EM complexes using HADDOCK2.4

DeepRank: a deep learning framework for data mining 3D protein-protein interfaces

Shape-Restrained Modeling of Protein–Small-Molecule Complexes with High Ambiguity Driven DOCKing

Native or Non-Native Protein–Protein Docking Models? Molecular Dynamics to the Rescue

50 years of PDB: a catalyst in structural biology

Collaborators (16)

Giuliano Malloci

Bo Hjorth Bentzen

Brian Pierce

Irina Moreira

Nanna MacAulay

Romina Oliva

Masakazu Sekijima

Li Xue

Rafal Slusarz

Birthe Kragelund

Adam K. Sieradzan

ANNA RANAUDO

Cunliang Geng

Trond Ulven

Guillaume Brysbaert

Paul Bates

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