Kei-ichi Okazaki

准教授/Associate Professor

Japan

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Articles (15)

Year:

2024

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2024

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2024

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2024

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2023

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2023

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2023

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2023

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2023

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2023

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2022

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2021

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2020

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2020

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2020

Collaborators (17)

Akihiko Nakamura

准教授/Associate Professor

分子科学研究所/Institute for Molecular Science

JAPAN

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Shi-Jie Chen

University of Missouri

UNITED STATES

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RYOTA IINO

教授/Professor

分子科学研究所/Institute for Molecular Science

JAPAN

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Jie Liang

University of Chicago

UNITED STATES

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Jun Ohnuki

助教/Assistant Professor

分子科学研究所/Institute for Molecular Science

JAPAN

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Takeharu Nagai

Professor

JAPAN

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Takayuki Uchihashi

Professor

Nagoya University

JAPAN

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Naotaka Tsutsumi

Assistant Professor

Okayama University

JAPAN

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Hiroshi Ueno

University of Tokyo

JAPAN

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Dima Kozakov

State University of New York at Stony Brook

UNITED STATES

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Toshifumi Mori

准教授/Associate Professor

Kyushu University

JAPAN

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Maho Yagi-Utsumi

助教/Assistant Professor

自然科学研究機構　生命創成探究センター/Exploratory Research Center on Life and Living Systems

JAPAN

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Atsuko Yamashita

Okayama University

JAPAN

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Koichi Kato

教授/Professor

自然科学研究機構　生命創成探究センター/Exploratory Research Center on Life and Living Systems

JAPAN

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Kazuhiro Aoki

教授/Professor

自然科学研究機構　生命創成探究センター/Exploratory Research Center on Life and Living Systems

JAPAN

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Robert Jernigan

Professor and Center Director

Iowa State University

UNITED STATES

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David Wöhlert

Max Planck Institute of Biophysics

GERMANY

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Kei-ichi Okazaki

Research Interests

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Articles (15)

Unveiling interatomic distances influencing the reaction coordinates in alanine dipeptide isomerization: An explainable deep learning approach

Improvement of the Green–Red Förster Resonance Energy Transfer-Based Ca2+ Indicator by Using the Green Fluorescent Protein, Gamillus, with a Trans Chromophore as the Donor

Accelerated Molecular Dynamics and AlphaFold Uncover a Missing Conformational State of Transporter Protein OxlT

Integration of AlphaFold with Molecular Dynamics for Efficient Conformational Sampling of Transporter Protein NarK

Protein folds vs. protein folding: Differing questions, different challenges

Molecular Design of FRET Probes Based on Domain Rearrangement of Protein Disulfide Isomerase for Monitoring Intracellular Redox Status

Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota.

Molecular mechanism on forcible ejection of ATPase inhibitory factor 1 from mitochondrial ATP synthase

Editorial: Recent advances in computational modelling of biomolecular complexes

Updating view of membrane transport proteins by simulation studies

Explaining reaction coordinates of alanine dipeptide isomerization obtained from deep neural networks using Explainable Artificial Intelligence (XAI)

Optimizing Gō-MARTINI Coarse-Grained Model for F-BAR Protein on Lipid Membrane

Chemical-State-Dependent Free Energy Profile from Single-Molecule Trajectories of Biomolecular Motor: Application to Processive Chitinase.

Learning reaction coordinates via cross-entropy minimization: Application to alanine dipeptide

Ion Binding and Selectivity of the Na+/H+ Antiporter MjNhaP1 from Experiment and Simulation

Collaborators (17)

Akihiko Nakamura

Shi-Jie Chen

RYOTA IINO

Jie Liang

Jun Ohnuki

Takeharu Nagai

Takayuki Uchihashi

Naotaka Tsutsumi

Hiroshi Ueno

Dima Kozakov

Toshifumi Mori

Maho Yagi-Utsumi

Atsuko Yamashita

Koichi Kato

Kazuhiro Aoki

Robert Jernigan

David Wöhlert

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