Kei-ichi Okazaki

准教授/Associate Professor

University Name

Japan

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Research Interests

Biochemistry

100%

Organic Chemistry

30%

Protein Chemistry

70%

Membrane Protein

50%

Transporter Biology

40%

Molecular Physics

30%

Chemical Reaction

30%

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Articles15

Unveiling interatomic distances influencing the reaction coordinates in alanine dipeptide isomerization: An explainable deep learning approach

Article Link

Year:

2024

Improvement of the Green–Red Förster Resonance Energy Transfer-Based Ca2+ Indicator by Using the Green Fluorescent Protein, Gamillus, with a Trans Chromophore as the Donor

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Year:

2024

Accelerated Molecular Dynamics and AlphaFold Uncover a Missing Conformational State of Transporter Protein OxlT

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Year:

2024

Integration of AlphaFold with Molecular Dynamics for Efficient Conformational Sampling of Transporter Protein NarK

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Year:

2024

Protein folds vs. protein folding: Differing questions, different challenges

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Year:

2023

Molecular Design of FRET Probes Based on Domain Rearrangement of Protein Disulfide Isomerase for Monitoring Intracellular Redox Status

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Year:

2023

Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota.

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Year:

2023

Molecular mechanism on forcible ejection of ATPase inhibitory factor 1 from mitochondrial ATP synthase

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Year:

2023

Editorial: Recent advances in computational modelling of biomolecular complexes

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Year:

2023

Updating view of membrane transport proteins by simulation studies

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Year:

2023

Explaining reaction coordinates of alanine dipeptide isomerization obtained from deep neural networks using Explainable Artificial Intelligence (XAI)

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Year:

2022

Optimizing Gō-MARTINI Coarse-Grained Model for F-BAR Protein on Lipid Membrane

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Year:

2021

Chemical-State-Dependent Free Energy Profile from Single-Molecule Trajectories of Biomolecular Motor: Application to Processive Chitinase.

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Year:

2020

Learning reaction coordinates via cross-entropy minimization: Application to alanine dipeptide

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Year:

2020

Ion Binding and Selectivity of the Na+/H+ Antiporter MjNhaP1 from Experiment and Simulation

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Year:

2020

Collaborators15

Akihiko Nakamura

准教授/Associate Professor

分子科学研究所/Institute for Molecular Science

JAPAN

Shi-Jie Chen

University of Missouri

UNITED STATES

RYOTA IINO

教授/Professor

分子科学研究所/Institute for Molecular Science

JAPAN

Jie Liang

University of Chicago

UNITED STATES

Jun Ohnuki

助教/Assistant Professor

分子科学研究所/Institute for Molecular Science

JAPAN

Takeharu Nagai

Professor

JAPAN

Takayuki Uchihashi

Professor

Nagoya University

JAPAN

Naotaka Tsutsumi

Assistant Professor

Okayama University

JAPAN

Dima Kozakov

State University of New York at Stony Brook

UNITED STATES

Toshifumi Mori

准教授/Associate Professor

Kyushu University

JAPAN

Maho Yagi-Utsumi

助教/Assistant Professor

自然科学研究機構　生命創成探究センター/Exploratory Research Center on Life and Living Systems

JAPAN

Atsuko Yamashita

Okayama University

JAPAN

Koichi Kato

教授/Professor

自然科学研究機構　生命創成探究センター/Exploratory Research Center on Life and Living Systems

JAPAN

Kazuhiro Aoki

教授/Professor

自然科学研究機構　生命創成探究センター/Exploratory Research Center on Life and Living Systems

JAPAN

Robert Jernigan

Professor and Center Director

Iowa State University

UNITED STATES

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