Sebastian Waszak

Associate Adjunct Professor

University of California, San Francisco
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Dr. Sebastian Waszak is an Associate Adjunct Professor at the University of California, San Francisco. His research focuses on cancer genetics, particularly the role of epigenetic and metabolic pathways in various types of gliomas and the implications of genomic alterations in tumor development. His recent publications include studies on mismatch repair deficiency, pediatric low-grade glioma, and analysis of somatic mutations across cancer types.

Articles (16)

PURPOSE The PNOC001 phase II single-arm trial sought to estimate progression-free survival (PFS) associated with everolimus therapy for progressive/recurrent pediatric low-grade glioma (pLGG) on the basis of phosphatidylinositol 3-kinase (PI3K)/AKT/mammalian target of rapamycin (mTOR) pathway activation as measured by phosphorylated-ribosomal protein S6 and to identify prognostic and predictive biomarkers. PATIENTS AND METHODS Patients, age 3-21 years, with progressive/recurrent pLGG received everolimus orally, 5 mg/m 2 once daily. Frequency of driver gene alterations was compared among independent pLGG cohorts of newly diagnosed and progressive/recurrent patients. PFS at 6 months (primary end point) and median PFS (secondary end point) were estimated for association with everolimus therapy. RESULTS Between 2012 and 2019, 65 subjects with progressive/recurrent pLGG (median age, 9.6 years; range, 3.0-19.9; 46% female) were enrolled, with a median follow-up of 57.5 months. The 6-month PFS was 67.4% (95% CI, 60.0 to 80.0) and median PFS was 11.1 months (95% CI, 7.6 to 19.8). Hypertriglyceridemia was the most common grade ≥3 adverse event. PI3K/AKT/mTOR pathway activation did not correlate with clinical outcomes (6-month PFS, active 68.4% v nonactive 63.3%; median PFS, active 11.2 months v nonactive 11.1 months; P = .80). Rare/novel KIAA1549::BRAF fusion breakpoints were most frequent in supratentorial midline pilocytic astrocytomas, in patients with progressive/recurrent disease, and correlated with poor clinical outcomes (median PFS, rare/novel KIAA1549::BRAF fusion breakpoints 6.1 months v common KIAA1549::BRAF fusion breakpoints 16.7 months; P < .05). Multivariate analysis confirmed their independent risk factor status for disease progression in PNOC001 and other, independent cohorts. Additionally, rare pathogenic germline variants in homologous recombination genes were identified in 6.8% of PNOC001 patients. CONCLUSION Everolimus is a well-tolerated therapy for progressive/recurrent pLGGs. Rare/novel KIAA1549::BRAF fusion breakpoints may define biomarkers for progressive disease and should be assessed in future clinical trials.

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Collaborators (48)

Genta Nagae

Project Associate Professor

University of Tokyo

JAPAN
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Rebecca Dagg

University of Oxford

UNITED KINGDOM
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Jakob S Pedersen

Aarhus University

DENMARK
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Wing Hing Wong

Stanford University

UNITED STATES
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Kirsten Kübler

University Hospital Bonn

GERMANY
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Lynn Fink

-

AUSTRALIA
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Shuto Hayashi

Associate Professor

Tokyo Medical and Dental University

JAPAN
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Colin Semple

Professor of Computational Biology

University of Edinburgh

UNITED KINGDOM
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Natalie Saini

Assistant Professor

Medical University of South Carolina

UNITED STATES
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Helena Kilpinen

University of Helsinki

FINLAND
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Adrienne M Flanagan

-

UNITED KINGDOM
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Ji Wan Park

Professor

Hallym University College of Medicine

SOUTH KOREA
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Guanlan Dong

Harvard University

UNITED STATES
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Marc van de Vijver

department head/professor

Amsterdam UMC Locatie VUmc

NETHERLANDS
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Keiran Raine

Head of Clinical Computational Research Informatics

-

UNITED KINGDOM
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Sabine Mueller

University of California

UNITED STATES
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Jüri Reimand

Associate professor

University of Toronto

CANADA
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Emilie Lalonde

Assistant professor

University of Western Ontario

CANADA
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David Townend

Professor of Law

City, University of London

UNITED KINGDOM
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Ian Davis

Professor

University of North Carolina at Chapel Hill School of Medicine

UNITED STATES
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Valerie Jakrot

Melanoma Institute Australia

AUSTRALIA
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Justin Whalley

University of Oxford

UNITED KINGDOM
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Marina Pajic

Laboratory Head (Faculty), Personalised Cancer Therapeutics Lab

Garvan Institute of Medical Research

AUSTRALIA
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Markus Ringnér

Lund University

SWEDEN
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Jeremy Chien

Associate Professor

University of California, Davis

UNITED STATES
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Karin Kassahn

Affiliate Associate Professor

University of Adelaide

AUSTRALIA
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Carlos D. Bustamante

Professor

Stanford University School of Medicine

UNITED STATES
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Andrea T. Franson

-

UNITED STATES
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Chao Li

The University of Manchester

UNITED KINGDOM
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Dale Garsed

University of Melbourne

AUSTRALIA
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Maxime Tarabichi

Université libre de Bruxelles

BELGIUM
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Brian O'Connor

Chief Data Officer

-

UNITED STATES
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David Ocana

European Bioinformatics Institute

UNITED KINGDOM
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Ted Hupp

Professor

University of Gdańsk

POLAND
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Joachim Weischenfeldt

Professor

University of Copenhagen

DENMARK
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Roelof Koster

Netherlands Cancer Institute-Antoni van Leeuwenhoek Hospital

NETHERLANDS
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Roland Schwarz

Professor

-

GERMANY
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Donghoon Lee

Assistant Professor

Icahn School of Medicine at Mount Sinai

UNITED STATES
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Johanna Bertl

Aarhus University

DENMARK
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Faraz Hach

The University of British Columbia

CANADA
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Francesco Favero

Københavns Universitet

DENMARK
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George Bova

Professor

University of Tampere

FINLAND
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Colin Purdie

Honorary Professor

University of Dundee

UNITED KINGDOM
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Carl Herrmann

Prof. Dr. at Heidelberg University

Heidelberg University

GERMANY
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Wenyi Wang

Professor

The University of Texas MD Anderson Cancer Center

UNITED STATES
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PETER W LAIRD

Van Andel Institute

UNITED STATES
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Sergei Yakneen

Chief Technology Officer

-

UNITED KINGDOM
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Ashton Connor

Houston Methodist

UNITED STATES
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