Sebastian Waszak
Associate Adjunct Professor
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Dr. Sebastian Waszak is an Associate Adjunct Professor at the University of California, San Francisco. His research focuses on cancer genetics, particularly the role of epigenetic and metabolic pathways in various types of gliomas and the implications of genomic alterations in tumor development. His recent publications include studies on mismatch repair deficiency, pediatric low-grade glioma, and analysis of somatic mutations across cancer types.
Articles (16)
PURPOSE The PNOC001 phase II single-arm trial sought to estimate progression-free survival (PFS) associated with everolimus therapy for progressive/recurrent pediatric low-grade glioma (pLGG) on the basis of phosphatidylinositol 3-kinase (PI3K)/AKT/mammalian target of rapamycin (mTOR) pathway activation as measured by phosphorylated-ribosomal protein S6 and to identify prognostic and predictive biomarkers. PATIENTS AND METHODS Patients, age 3-21 years, with progressive/recurrent pLGG received everolimus orally, 5 mg/m 2 once daily. Frequency of driver gene alterations was compared among independent pLGG cohorts of newly diagnosed and progressive/recurrent patients. PFS at 6 months (primary end point) and median PFS (secondary end point) were estimated for association with everolimus therapy. RESULTS Between 2012 and 2019, 65 subjects with progressive/recurrent pLGG (median age, 9.6 years; range, 3.0-19.9; 46% female) were enrolled, with a median follow-up of 57.5 months. The 6-month PFS was 67.4% (95% CI, 60.0 to 80.0) and median PFS was 11.1 months (95% CI, 7.6 to 19.8). Hypertriglyceridemia was the most common grade ≥3 adverse event. PI3K/AKT/mTOR pathway activation did not correlate with clinical outcomes (6-month PFS, active 68.4% v nonactive 63.3%; median PFS, active 11.2 months v nonactive 11.1 months; P = .80). Rare/novel KIAA1549::BRAF fusion breakpoints were most frequent in supratentorial midline pilocytic astrocytomas, in patients with progressive/recurrent disease, and correlated with poor clinical outcomes (median PFS, rare/novel KIAA1549::BRAF fusion breakpoints 6.1 months v common KIAA1549::BRAF fusion breakpoints 16.7 months; P < .05). Multivariate analysis confirmed their independent risk factor status for disease progression in PNOC001 and other, independent cohorts. Additionally, rare pathogenic germline variants in homologous recombination genes were identified in 6.8% of PNOC001 patients. CONCLUSION Everolimus is a well-tolerated therapy for progressive/recurrent pLGGs. Rare/novel KIAA1549::BRAF fusion breakpoints may define biomarkers for progressive disease and should be assessed in future clinical trials.
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Collaborators (48)
Genta Nagae
Project Associate Professor
University of Tokyo
Rebecca Dagg
University of Oxford
Jakob S Pedersen
Aarhus University
Wing Hing Wong
Stanford University
Kirsten Kübler
University Hospital Bonn
Lynn Fink
-
Shuto Hayashi
Associate Professor
Tokyo Medical and Dental University
Colin Semple
Professor of Computational Biology
University of Edinburgh
Natalie Saini
Assistant Professor
Medical University of South Carolina
Helena Kilpinen
University of Helsinki
Adrienne M Flanagan
-
Ji Wan Park
Professor
Hallym University College of Medicine
Guanlan Dong
Harvard University
Marc van de Vijver
department head/professor
Amsterdam UMC Locatie VUmc
Keiran Raine
Head of Clinical Computational Research Informatics
-
Sabine Mueller
University of California
Jüri Reimand
Associate professor
University of Toronto
Emilie Lalonde
Assistant professor
University of Western Ontario
David Townend
Professor of Law
City, University of London
Ian Davis
Professor
University of North Carolina at Chapel Hill School of Medicine
Valerie Jakrot
Melanoma Institute Australia
Justin Whalley
University of Oxford
Marina Pajic
Laboratory Head (Faculty), Personalised Cancer Therapeutics Lab
Garvan Institute of Medical Research
Markus Ringnér
Lund University
Jeremy Chien
Associate Professor
University of California, Davis
Karin Kassahn
Affiliate Associate Professor
University of Adelaide
Carlos D. Bustamante
Professor
Stanford University School of Medicine
Andrea T. Franson
-
Chao Li
The University of Manchester
Dale Garsed
University of Melbourne
Maxime Tarabichi
Université libre de Bruxelles
Brian O'Connor
Chief Data Officer
-
David Ocana
European Bioinformatics Institute
Ted Hupp
Professor
University of Gdańsk
Joachim Weischenfeldt
Professor
University of Copenhagen
Roelof Koster
Netherlands Cancer Institute-Antoni van Leeuwenhoek Hospital
Roland Schwarz
Professor
-
Donghoon Lee
Assistant Professor
Icahn School of Medicine at Mount Sinai
Johanna Bertl
Aarhus University
Faraz Hach
The University of British Columbia
Francesco Favero
Københavns Universitet
George Bova
Professor
University of Tampere
Colin Purdie
Honorary Professor
University of Dundee
Carl Herrmann
Prof. Dr. at Heidelberg University
Heidelberg University
Wenyi Wang
Professor
The University of Texas MD Anderson Cancer Center
PETER W LAIRD
Van Andel Institute
Sergei Yakneen
Chief Technology Officer
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Ashton Connor
Houston Methodist
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